Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3991 ATGAGTTCTAAAAAGATTACATGGAAGTCTATTGTCTTCATCTTAAGTTGTTATAAGACCAAATTCCCTTTGCAGGAATCAGAAAAACAGGTTTTGAAACATGGTTCTTTCCAAAGGCTATGTCTCTCAGATGTAAGCATTTCAAGCACTAATCAAGCCATTGAGGATCTTTCTATTTCTTTTGCTGGCTCAGAGCTTTACACATTCACTCTGGAGGAGCTCAGAGAAGCAACACATGATTTCTCATGGAGTAATGTGCTCGGTGAAGGCGGATTTGGACCCGTGTTCAAGGGTTTTGTTGATAACAAACTCAGGCCTCGTTTGAAGGCTCAGCCTGTTGCTGTGAAACAATTGAACTTGGATGGGTTACAAGGTCACAGGGAATGGCTGGCGGAAATTATATTCCTTGGACAGCTGAGACATCCACATCTTGTTAAGCTAATTGGATACTGTTGTGAGGAGGAGCACAGGCTTTTGGTGTATGAATACATGCCAAGAGGAAGCTTAGAGAATCAATTGTTCAAAAGGTACTCTGCTGCCTTACCATGGTCAACCAGGATGAAAATTGCATTAGGTGCAGCTAAGGGTCTGGCCTTCCTTCATGAAGCAGATAAACCTGTAATATACAGGGATTTCAAAAGTTCCAATATCTTGCTCGATTCGGATTACACAGCCAAACTATCAGACCTTGGGCTAGCTAAGGATGGTCCTGAAGGGGAAGACACGCATGTAACCACAACATGCATAATGGGAACAAGAGGATATGCTGCTCCTGAGTACATAATGGCAGGTCACCTTTCTACCAAGAGTGATGTGTATAGCTATGGAGTTGTGTTGTTGGAATTGCTTACCGGAAAACGGGTACTGGACAAGACCCGGCCAAACCGAGAGCGGTTCCTGGTGGAATGGGCAAGGCCTCTTTTGAGAGATCAAAGGAAACTGCAGCATGTCATAGACCCAAGATTGGAATGGCAGTTTCCTATGAAAGGAGCTATGAAGGTTGCTGCATTGACTTATAAATGCTTGAGCCACCACCCCGCTCCAAGGCCCACTATGAATGATGTGGTAAGGATATTGGAGACACTTCAGGACTTTGATGATGTTATAATAGGACCATTTGTGTATTTTGCCATTGGTGAAAGTGGCCAATGA 1152 0.4366 MSSKKITWKSIVFILSCYKTKFPLQESEKQVLKHGSFQRLCLSDVSISSTNQAIEDLSISFAGSELYTFTLEELREATHDFSWSNVLGEGGFGPVFKGFVDNKLRPRLKAQPVAVKQLNLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEEEHRLLVYEYMPRGSLENQLFKRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKSSNILLDSDYTAKLSDLGLAKDGPEGEDTHVTTTCIMGTRGYAAPEYIMAGHLSTKSDVYSYGVVLLELLTGKRVLDKTRPNRERFLVEWARPLLRDQRKLQHVIDPRLEWQFPMKGAMKVAALTYKCLSHHPAPRPTMNDVVRILETLQDFDDVIIGPFVYFAIGESGQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3991 383 Gene3D Phosphorylase Kinase; domain 1 43 163 - -
Lja1g3991 383 PANTHER KINASE 1B 21 382 - -
Lja1g3991 383 Gene3D Transferase(Phosphotransferase) domain 1 164 369 - -
Lja1g3991 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Lja1g3991 383 ProSiteProfiles Protein kinase domain profile. 81 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3991 383 SUPERFAMILY Protein kinase-like (PK-like) 57 362 IPR011009 -
Lja1g3991 383 PANTHER OS01G0588500 PROTEIN-RELATED 21 382 - -
Lja1g3991 383 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3991 Lja-Chr1 50661277 50663832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3991 68 359 Glycoside Hydrolase AT3G07070 50.847 1.69e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja1g3991 PK_Tyr_Ser-Thr 5.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3991 - - gmx:100805771 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3991 1 50661277 50663832 Lja1g3991 1 50661277 50663832 ECH
Lja1g3991 1 50661277 50663832 Lja5g2948 5 57964712 57968347 ECH
Lja3g1596 3 17518093 17520554 Lja1g3991 1 50661277 50663832 ECH