Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3990 ATGATGCACATGACCTTTTACTGGGGGAAGAAGGTAACAATCCTCTTCGATTCATGGAAAACCGATTCATGGACGAGTTACATCCTGAGTCTACTCGCGTGCTTCATCATCGCTGTTTTCTACCAGGTTCTCGAGAATCGCCGCATTCGCCTCAAGCTCTTCGCCGCCGGGAAGCCGGTTCCGCTGGAGATTGAAACCCCTCTCATTCGCCGGAAGATTGTCGGAGATAAGGCGAAGGCTGGTGTGAAGGTTGGTGGATCGATTCTGTTCGGGGTGAGCTCGGGGATCGGGTATCTGCTCATGCTGGCGGTTATGTCGTTTAACGGTGGGGTGTTTGTGGCTATTGTGGTGGGGCTTGCGTTTGGGTATTTCTTCTTCAGGAGTGATGGGGAAGATTCTGTTGTGGTTGATAGTTCCTGCGCTTGTGCTTGA 432 0.5185 MMHMTFYWGKKVTILFDSWKTDSWTSYILSLLACFIIAVFYQVLENRRIRLKLFAAGKPVPLEIETPLIRRKIVGDKAKAGVKVGGSILFGVSSGIGYLLMLAVMSFNGGVFVAIVVGLAFGYFFFRSDGEDSVVVDSSCACA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3990 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 143 IPR007274 GO:0005375|GO:0016021|GO:0035434
Lja1g3990 143 PANTHER CTR FAMILY COPPER TRANSPORTER 1 143 - -
Lja1g3990 143 Pfam Ctr copper transporter family 4 126 IPR007274 GO:0005375|GO:0016021|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3990 Lja-Chr1 50654205 50655104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3990 1 143 Inorganic Solute Cotransporters AT5G20650 54.000 4.23e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3990 K14686 - gmx:100805457 215.312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3990 1 50654205 50655104 Lja1g3990 1 50654205 50655104 ECH
Lja1g3990 1 50654205 50655104 Lja5g2946 5 57955055 57955474 ECH
Lja4g1505 4 13904044 13904526 Lja1g3990 1 50654205 50655104 ECH
Lja3g1603 3 17687445 17689336 Lja1g3990 1 50654205 50655104 ECH