Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3987 ATGGATGATTCTTCACAACACACCAAGAATCCTCTCAAGCGAACCTTTGATCAATTATACACAAAGCCACAAGATGACGATTCTCCCACATTCATCAACATTGATCCCAGAAGGTATCAGAATGAGGTATTTCAAGTTGCAAGGAAGAGGAACACCATAGCAGTGTTGGATACAGGCACTGGGAAAACCTTGATAGCAATAATGCTTATAAAAGACATTGCTCAAGCTATCAAGTCTAGTGGCAAGAAGAAGTTGATTATAGTCTTGGCTCCAATCGTTCATCTTGTACATCAGCTATACAATGATTTGAAGCATCATACCGGTTTTCAAGTTGAGGAGTACTATGGGAGAGGAGTTGATGAATGGAATTTAAAGACCTGGGAGAAGGAGGTTTCTGAAAATGATGTGCTGGTTATGACACCCCAGATTCTCTTGAATGCCTTAACTAAAGCATTTCTGAAAGTAGAAATGATAAGCTTGATGGTTATCGACGAATGTCATAATGCAACTGGCAACCATCCCTATGCAAGAATAATGAAGGAATTTTATCACCGAGCTAATGAGAAGCCAATGATTTTTGGGATGACAGCATCGCCAGTAGTTAAAAAAGGTAATTCCTCTACTTTGGATTGTGAGGGTCAGATATCAGAACTTGAAAGCATCTTGGATTCTCAGAGATATACTGTTGAAGATCGGACAGAGATGGATGTATGTAACCCTTCTGCAAAAGAGAGTTGTAGATTTTACGACCAAGCACGATTTCCTGCTTTAAGTTTGAAGCCAAAAATTGAAGCCTTGTGGTTGAAGTCTGATGCACTATTGTCAGAATTTCAAAGTAACTATAAGGATGTGGACAGCAAATTTAAGACACTGCATCAGCGGATGTCAAATGACCTTGCAAAAGTTTTATATTGCCTCGAAGATCTTGGACTCTTGTGTGCTTATGAGGCTGTTAAAATCTGTCATGCGAAGTTCTCCAAAATTGAAGGAGAGTGTGAAGTTTACCGAAAAGGTTATCGTCAGTGTATAACTATCTTAGAAGACGTAATCCAAATAATTGAAGAATCCCTCAATCTTGCCGATAAAATGATTTTGGATGTCGAATCTGATTACTCAAATGCAGTAGACAAGGGATACATCTCACCAAAATTACATGAACTTATTAAAATCTTCCACACGTTTGGAGAATCCAATGAGGTGTTGTGCCTCATTTTTGTCGAAAGAATCATTGCAGCAAAGGTGATTCAAAGATTTGTGAAGAATGTTCCCCAAATATCTCATTTAACAGTTTCCTATTTGACTGGAAACCATACATCTGTTGACGCACTGGCTCCTACGAGGCAGAAGGAGATATTGGATTCTTTCCGATCTGGAAAGGTCAATCTTCTATTTACTACTGATGTACTTGAGGAAGGAATTAATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCCAAGACAGTCCGCAGTTATGTCCAATCTCGAGGAAGATCTAGGCAGGCTAACTCCCAATTTATTTTGATGTTGGAGAGGGGAAACTTGAAGCAAAGAAATCAACACTTTGAGATAATCAGGACTGAGCGCTTCATGACTGATGCAGCTATTAACAAAGTCCACGAGTCTAATTTAAGGGCGTTTACAGTAGGGAACACAAATGCATATGTCGTGGATTCCACTGGAGCATCAGTCAGTCTACATTCTAGTTTAAGTCTTATTAATCAATATTGCGAAAAGCTCCCACGAGATAAGTACTCTTGTGTGAAGCCGACTTTTGAGTCTCTGCCTATGGAGGGGTGTTACAAGTGTAAATTAATATTGCCACCTAATGCAGCTTTCCAAACAATAGTTGGTCCTTCAGGAAAAACTGCTCGTTTGGCAAAGAATCTTGTATGTTTAGAAGCTTGTAAGAAGCTGCATCAAATGGGGGCCTTAAATGATCATCTTGTCCCCTTCACTGAAGAACCTTCAGAGGCACACCATATTGTGAAAAACAAAGAATCTAGTTCAGGTGCAGGTGCAGGAACCACAAAAAGAAAGGAGTTACATGGCACAGCCAGCATTCGTGCATTATGTGGTGCATGGGGAAACAAACCTGAAGGAGCCAACTTTAATGCATATAAATTTGAGTTCACTTGTAATATTGTTAGTGAAATTTATTCTGGATTTGTTCTTCTGATCGAGTCAAAGCTTGATGATGACGTTGGGAATATGGAATTGGATCTTTACTTAGTGTCGAAGATTGTGAAGGCTTCTGTCTCTTCATGTGGTAAAGTTGATTTGGATGCTGAACAGATGATGAAAGCAAAATGCTTCCATGAGTTTTTCTTCAATGGTTTGTTCGGGAGATTGGTTTCTAGGTCCACGTCAACCCCAGGGGAAAGGGTGTTTTTACTTCAGGAAGACACACGGTCATTGTGGAGCCCAACAAACTTGTATTTTCTTCTACCACTTGAGAAATTGAGTGATGTATGTAAGGGATCTTTGAAAATACATTGGTCTGGAATTAGTTCATGTGTTTCTGCTGTTGAATTCTTAAGGCAGAAATTTTCGTCGGTTGCCGGAGATTGTGATAATGGCAGCAAAGTCTCATCACCTTGTGATACAAATTCATCAAATGCAGAAAGCACAAACAAGATTCACTTTGCTAATTGTGTGCTTGATCTTAATGATCTGAGAGAAATTGTAGTTTTGGCCATTCACACTGGGAAAGTATATTGCATCATTGAAGCAGTTATGGACTTATCTGCTGAAAGTCCTTTTGATGGAAACAATGATAAGTCTGCGGAACCCATAACTTTCTCGAATTATTTCCTCAAAAGGTATGGGATTACACTGAGACATCCAGGACAACCTTTGCTACGGTTGAAGCAAAGTCATAACTCTCACAATCTTCTTTTTAACTTCCATGAGAAAGATGTTGGGGGCAAGTCATCACAAACTGGTCCGGGAGCCTCAAAAGTGCCTGTGCATGTTCACGTGCCACCTGAGCTTCTGTACATTATTGATGTTAAAAGAGATGTCTTGAAGTCAATGTACTTGCTACCATCTTTGATGCACCGTATTGAAACTTTATTGTTATCCAGTCAGCTCAGGGAAGAGATAAATGATCAAGCTAGTAATTTGAACATATCTAGCTCTTTGATTCTACAAGCACTCACAACTTCAAGATGTTGTGAAAATTTTTCAATGGAACGGCTTGAATTGCTAGGAGATTCTGTTTTGAAATATGTGGTGAGCTGCCACCTCTTTCTAAAGTATCCTGAGAATCATGAAGGAAAATTAACTGCCAGACGACAACAGGTTATTTGTAATGCAACCTTACATAAACTGGGAACAAATCGCAAATTACAGGGATATATCTTGGACTCTGCATTTGAACCTCGCCGGTGGGTTGCTCCTGGGCAGCACTCTATATATCCTGTTCCTTGTGATTGTGGGTTGGAAACCCTAGAAGTGCCTATAGATGCAAAATTCCGTTCAGAAGATCCAAAAGTTGTGGTTGGTAAGTCCTGTGATAGGGGTCACCGCTGGATGTGCTCGAAGACTATTGCGGACTGTGTTGAATCTTTGATAGGAGCATACTTCGCAGGTGGTGGACTGATTGCTTCCCTTCATTTCATGAAATGGCTTGGGATTGATGCAGAACTTGAACCATCCTTGGTTGAGAAAGCCATCACGGTTGCATCACTGCATACATATGTGCCAAAATCAAATGAGATAACGAGCCTTGAAAACAAACTTGGATATGAATTTTCTACCAAGGGACTCCTACTGGAGGCAATTACACATTTGTCTGAGGCAGAACTTGGGAATGGCTGCTGTTATGAGAGGCTTGAATTTCTGGGTGACTCAGTATTGGATGTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTCGTGAAGGAGAATTGACTGAATTGCGCTCTGCTTCTGTCAATAATGAAAATTTTGCTCAAGTTGCTGTTAGAAAAAACCTTCACATGCACCTTTTGCATAGCTCAGGATTATTACTAAACCAGATATCTGAATATGCGAAGGTCGTGTCTGAATCAGAGAACAACACCTTATTACTTCTTGGCATTAAAGCTCCCAAGGCACTTGGAGATCTGGTGGAAAGTATTGCTGGGGCTATACTAATTGATACCAAGCTCAGTCTCGACGAAGTGTGGAAATTTTTCAATCCTCTCTTATCTCCAATAGTTACTCCTGATAACCTTGAACTGATTCCATCACGTAAACTAAGTCGATTATGTGACTCTCTTGGATACTTTATGAAAATAAAAGAAAAATATGATAATAAGGAATCCACGGAACATGTTGAGCTCAGTGTCCAGCTTCCAAATGCCCTTTTAGTTCAAAAGGGAAAAGGACCAAATAAAAGAATAGCAAAAGAACAAGCTGCTTTTCATTTGCTGAATGATCTTGAGAAGTGGGGACTTTCATATTACAGTGGCATGTCCAAGGGAAAAATGGATAATCATATCCATATCCATGATTCATCTTACGTCAAAAATGATTTTAGTATTTCTGACGAACACTCCTTAAAGCCAGCACATAAAAGAATCAAATTGGATGAAACTAACTTAACTGCAATTCCATCTACTGGTTGTTTGCCTGTCAATGGCTCTTCCAGTGAAGCCTCTGATGTTATTGCTTCGACTCCAGTTATTTCATTAACTAGTATGAAGAAGGGAGAACCCCGGAGCAAACTCAATGAACTGTGCAAGAAAATGCAGTGGCCATTGCCTTCTTTTGATCCAACAGAGTATAAAGATAGAAGCCAATTTGGATCCTGTGAAGCGCTTGAAGGAAGTAAAGGACAAAACTGTTTTGTGTCGACAATCACCATGATCATGCCTAATGAGGGTACAATAGAATGCAGAGGAGAAGCTAGGAGTGATAAAAAGAGCTCATATGACTCTGCTGCAGTTAAAATGCTTCATGAGCTACAACGACTGGGAAAACTTGAGATTGATAATAATCCCCAACAATCTTGTCCTGTATAA 5019 0.3981 MDDSSQHTKNPLKRTFDQLYTKPQDDDSPTFINIDPRRYQNEVFQVARKRNTIAVLDTGTGKTLIAIMLIKDIAQAIKSSGKKKLIIVLAPIVHLVHQLYNDLKHHTGFQVEEYYGRGVDEWNLKTWEKEVSENDVLVMTPQILLNALTKAFLKVEMISLMVIDECHNATGNHPYARIMKEFYHRANEKPMIFGMTASPVVKKGNSSTLDCEGQISELESILDSQRYTVEDRTEMDVCNPSAKESCRFYDQARFPALSLKPKIEALWLKSDALLSEFQSNYKDVDSKFKTLHQRMSNDLAKVLYCLEDLGLLCAYEAVKICHAKFSKIEGECEVYRKGYRQCITILEDVIQIIEESLNLADKMILDVESDYSNAVDKGYISPKLHELIKIFHTFGESNEVLCLIFVERIIAAKVIQRFVKNVPQISHLTVSYLTGNHTSVDALAPTRQKEILDSFRSGKVNLLFTTDVLEEGINVPNCSCVIRFDLPKTVRSYVQSRGRSRQANSQFILMLERGNLKQRNQHFEIIRTERFMTDAAINKVHESNLRAFTVGNTNAYVVDSTGASVSLHSSLSLINQYCEKLPRDKYSCVKPTFESLPMEGCYKCKLILPPNAAFQTIVGPSGKTARLAKNLVCLEACKKLHQMGALNDHLVPFTEEPSEAHHIVKNKESSSGAGAGTTKRKELHGTASIRALCGAWGNKPEGANFNAYKFEFTCNIVSEIYSGFVLLIESKLDDDVGNMELDLYLVSKIVKASVSSCGKVDLDAEQMMKAKCFHEFFFNGLFGRLVSRSTSTPGERVFLLQEDTRSLWSPTNLYFLLPLEKLSDVCKGSLKIHWSGISSCVSAVEFLRQKFSSVAGDCDNGSKVSSPCDTNSSNAESTNKIHFANCVLDLNDLREIVVLAIHTGKVYCIIEAVMDLSAESPFDGNNDKSAEPITFSNYFLKRYGITLRHPGQPLLRLKQSHNSHNLLFNFHEKDVGGKSSQTGPGASKVPVHVHVPPELLYIIDVKRDVLKSMYLLPSLMHRIETLLLSSQLREEINDQASNLNISSSLILQALTTSRCCENFSMERLELLGDSVLKYVVSCHLFLKYPENHEGKLTARRQQVICNATLHKLGTNRKLQGYILDSAFEPRRWVAPGQHSIYPVPCDCGLETLEVPIDAKFRSEDPKVVVGKSCDRGHRWMCSKTIADCVESLIGAYFAGGGLIASLHFMKWLGIDAELEPSLVEKAITVASLHTYVPKSNEITSLENKLGYEFSTKGLLLEAITHLSEAELGNGCCYERLEFLGDSVLDVLITWHLYQSHTDIREGELTELRSASVNNENFAQVAVRKNLHMHLLHSSGLLLNQISEYAKVVSESENNTLLLLGIKAPKALGDLVESIAGAILIDTKLSLDEVWKFFNPLLSPIVTPDNLELIPSRKLSRLCDSLGYFMKIKEKYDNKESTEHVELSVQLPNALLVQKGKGPNKRIAKEQAAFHLLNDLEKWGLSYYSGMSKGKMDNHIHIHDSSYVKNDFSISDEHSLKPAHKRIKLDETNLTAIPSTGCLPVNGSSSEASDVIASTPVISLTSMKKGEPRSKLNELCKKMQWPLPSFDPTEYKDRSQFGSCEALEGSKGQNCFVSTITMIMPNEGTIECRGEARSDKKSSYDSAAVKMLHELQRLGKLEIDNNPQQSCPV* 1673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3987 1672 ProSitePatterns Ribonuclease III family signature. 1278 1286 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1458 1481 IPR014720 -
Lja1g3987 1672 Gene3D Ribonuclease III domain 1238 1409 IPR036389 GO:0004525|GO:0006396
Lja1g3987 1672 ProSiteProfiles PAZ domain profile. 892 1004 IPR003100 GO:0005515
Lja1g3987 1672 Gene3D Dicer dimerisation domain 565 662 IPR038248 -
Lja1g3987 1672 Gene3D - 1576 1656 - -
Lja1g3987 1672 Gene3D paz domain 875 1002 - -
Lja1g3987 1672 Gene3D - 32 269 IPR027417 -
Lja1g3987 1672 Pfam Dicer dimerisation domain 570 656 - -
Lja1g3987 1672 CDD RIBOc 1258 1410 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 Gene3D - 373 541 IPR027417 -
Lja1g3987 1672 SUPERFAMILY PAZ domain 890 1004 IPR036085 GO:0005515
Lja1g3987 1672 CDD DEXHc_dicer 36 231 - -
Lja1g3987 1672 ProSiteProfiles Ribonuclease III family domain profile. 1029 1201 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 Gene3D Ribonuclease III domain 1030 1212 IPR036389 GO:0004525|GO:0006396
Lja1g3987 1672 SMART PAZ_2_a_3 869 1028 IPR003100 GO:0005515
Lja1g3987 1672 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 3 36 1660 - -
Lja1g3987 1672 Pfam Ribonuclease III domain 1066 1198 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 Pfam Ribonuclease III domain 1278 1386 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 Pfam PAZ domain 881 1025 IPR003100 GO:0005515
Lja1g3987 1672 CDD SF2_C_dicer 379 511 - -
Lja1g3987 1672 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 541 IPR001650 -
Lja1g3987 1672 SUPERFAMILY RNase III domain-like 1241 1407 IPR036389 GO:0004525|GO:0006396
Lja1g3987 1672 SMART riboneu5 1048 1221 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 SMART riboneu5 1257 1410 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 CDD RIBOc 1048 1212 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 ProSiteProfiles Ribonuclease III family domain profile. 1242 1387 IPR000999 GO:0004525|GO:0006396
Lja1g3987 1672 SMART ultradead3 32 230 IPR014001 -
Lja1g3987 1672 PANTHER DICER-RELATED 36 1660 - -
Lja1g3987 1672 Pfam Type III restriction enzyme, res subunit 47 199 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lja1g3987 1672 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 570 660 IPR005034 GO:0016891
Lja1g3987 1672 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 517 IPR027417 -
Lja1g3987 1672 SUPERFAMILY RNase III domain-like 1022 1218 IPR036389 GO:0004525|GO:0006396
Lja1g3987 1672 SMART helicmild6 408 503 IPR001650 -
Lja1g3987 1672 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 43 217 IPR014001 -
Lja1g3987 1672 Pfam Helicase conserved C-terminal domain 396 500 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3987 Lja-Chr1 50604149 50635233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3987 399 500 Eukaryotic Initiation Factors Gene Family AT1G72730 35.238 3.07e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja1g3987 PAZ 2.1e-13 CL0638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3987 K11592 - gmx:100806831 2376.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3987 1 50604149 50635233 Lja1g3987 1 50604149 50635233 ECH