Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3986 ATGGGTGGTGATGGTATAGTTGAAGTTGTGGGTGGTAAAGGGTGCTCGAGGCTGTTTTCATCTTCATTCAGAGGTCTTCAACCAATGGAGCCAGTGTCTCCTGCTTCATCCTCTTCACGAGTTCGATCAAGTGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCTAAAGAAACAAGGAATCAGGTCAGGGAAGCTACGGAGAGATTAGGCGGCCAGTATAGCTCCAATCTGCATCCCCAATGTACCCACTTGGTGGTTCAAAGCTTTGGTGGACGCAAGTTGGAGCATGCACTGAAGCATGGAGCGAAAAATGGTCTCCTTGTTGTCACACTTGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTGAGGTTGACTGAATCGCATTATAGTGTTAAGAGTTACGGGGATAACAATATGCGCTTGGTTGATTTTAAACTGCTTACTCGGTATACAGAAGCTGAAAACTATTGCCTTCCTGCAAGAATCCATGAAACCAAGCATGCTCATAGTGTTGAAGAAATTCAAAGATTCTCTGGGAGAGAGTCAACTTTGTCGGGATGTTCCATCTATGTTGATCCCGGCATTTCATCTGAATTGTGCACCAAGGTTGTTGAGACTGCCTCAAGAGAAGGTGCTCGTTTGGTGGAACAATGGTTTGTTGGCTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATCCAAAGATATCTTGGATACTCTAGTAACCTCGTTACACCTCTGTGGATCCTCAAGACCGCTAAGGAGAAAAATGTGCAAAGACTTGTTCACATGTCTGCTGATTTGGCAAAGCAAGTTGGTTTGATGCTTGAAGACATTAACAATGGCATTTCAGGGAAGGAAGTAATAAAGCAAAAAGTCCATGGTGATCTTCAGGGCAGTAAAAGTGAAGTTAGTTACAAAGAAAGGCAACAAATTGTAAATTCGGCAAAAATTGGAGTTAGAAACCGCCGTGGCCGTCGAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACACCCAACAATCTCCTGGACTCCATCAGCTGGTCGATATCCGAACCAACTTCAACTGCTTCTATTTACACAGACTCTTTCAGTGTTGAAGATCCCAGTGAAAATTGCAATTCAATATTTTTTGAATCAAAAGGGGATGGCAAGGATTCAGAAGCTTCATTTGCAAACTCCACTCGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGATATTTAAAAACCATTTTCTTACTATACTCTTCCCAATAGACCGATTTTCTGAGATGGGTCCTTCTTCAAGAACATTTTTCAGCCACAGCGGTTTTACTTGTCTTCAGGTGTTGGATCATATCCAGGCATTTTATCAGGAGAACATGTCAAGCCAGGAAATAGAAGCAGCAATTCACACTGACTCAAGACACGCTGATAGGCTTCGATCGGTGTACTCGAGTAAGGAAACAGCAGAACATGGCTGTGTGATGTTCAAACGGATTGAATTCATAGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAGCCGGGGACAACAACTCCAACGTGTATGAACTATTACTTAGGGCGTAA 1590 0.4277 MGGDGIVEVVGGKGCSRLFSSSFRGLQPMEPVSPASSSSRVRSSAPFAGLVICVTGLSKETRNQVREATERLGGQYSSNLHPQCTHLVVQSFGGRKLEHALKHGAKNGLLVVTLGWFVDSVRKNVRLTESHYSVKSYGDNNMRLVDFKLLTRYTEAENYCLPARIHETKHAHSVEEIQRFSGRESTLSGCSIYVDPGISSELCTKVVETASREGARLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLVTPLWILKTAKEKNVQRLVHMSADLAKQVGLMLEDINNGISGKEVIKQKVHGDLQGSKSEVSYKERQQIVNSAKIGVRNRRGRRMQTCQTPIRPITPNNLLDSISWSISEPTSTASIYTDSFSVEDPSENCNSIFFESKGDGKDSEASFANSTRPLTESEKSELIFKNHFLTILFPIDRFSEMGPSSRTFFSHSGFTCLQVLDHIQAFYQENMSSQEIEAAIHTDSRHADRLRSVYSSKETAEHGCVMFKRIEFIGSRTSFEMLKRVAGDNNSNVYELLLRA* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3986 529 ProSiteProfiles BRCT domain profile. 182 262 IPR001357 -
Lja1g3986 529 Gene3D BRCT domain 45 136 IPR036420 -
Lja1g3986 529 SUPERFAMILY BRCT domain 42 135 IPR036420 -
Lja1g3986 529 CDD BRCT_TopBP1_rpt2_like 46 124 - -
Lja1g3986 529 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 4 529 - -
Lja1g3986 529 Pfam twin BRCT domain 50 116 IPR001357 -
Lja1g3986 529 SMART BRCT_7 44 124 IPR001357 -
Lja1g3986 529 SMART BRCT_7 184 260 IPR001357 -
Lja1g3986 529 ProSiteProfiles BRCT domain profile. 42 134 IPR001357 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3986 46 134 Core DNA Replication Machinery Family AT1G77320 38.202 5.90e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3986 - - gmx:100815253 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3986 1 50597141 50603268 Lja1g3986 1 50597141 50603268 ECH