Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3985 ATGGCGGCTGTGATGATGATGATGGAAGAAATCAAGGAAAAAGCAAATCGTCTCGAAATCGATCCCTCTTCAATCGATCTCGACTCCATTCACCTCCCACCCGGTGAAGATTGCGGCATCGTCAGTGACGATGAGGATGTTTATCAAGAGGATAATCTCGAATTCGACTCTGGTTTCGGCAACATTATCGTTGTCGATAACCTCCCCGTTGTTCCTAAGGAAAAATTTGAGAAGCTTGAAGGTGTTGTTAGGAAAATCTATAGTCAGATCGGAGTTATCAAGGACGATGGTCTCTGGATGCCTGTGGATCCTGAAACGGGGAAAACCGTGGGGTATTGCTTCATTGAATACAATACTCCTCAGGAAGCTGAGCTTGCTAAGGAGAAGACCCACGGTTACAAATTGGACCGTGCTCACATATTTGCGGTGAACATGTTCGATGACATTGACAGGTTTATGAAAGTTCCCAATGAGTGGGCTCCTCCTGAGACTAAACCATATACTCCTGGGGAAAATCTTCAACACTGGCTCACCGATGCCAAGGCCCGAGACCAGTTTGTGATTCGTGCGGGTTCAGATACTGAGGTTTTGTGGAATGATGCTAGGCATTTGAAGCCTGATCCTGTTTACAAGCGTACTTATTGGACTGAGAGTTTTGTGCAATGGTCCCCTTTGGGCACATACTTGGCAACAGTTCACAGGCAGGGGGCAGCAGTCTGGGGAGGTGCCACAACCTTCAATCGTCTCATGCGTTATGCTCATCCTCAGGTAAAACTCATTGATTTTTCACCTGGTGAGCGATACTTGGTTACTTATAGTAGCCATGAACCAAGCAATCCCCGTGATGCTAATAGAGTTGTGATTAATATATTTGATGTGAGAACTGGTAAAGTGATGCGGGATTTCAAAGGAAGTGCTGATGATTTTGCAATTGGAGGTACTGGAGGTGTCACTGGGGTGTCATGGCCTGTTTTCAAATGGAGTAGTGGAGATAAGTACTTTGCAAGGATGGGGAAAAATGTACTCTCTGTATATGAGACAGAGACCTTCTCCCTGGTTGACAAAAAATCATTGAAGGTTGAAAATATAATGGATTTTAGCTGGTCCCCAACTGATCCAATCATTGCACTCTTTGTTCCTGAGAGTGGTGGTGGTAACCAGCCTGCTAGGGTTAGTCTGATCCAAATTCCTAGCAAAGAGGAACTCAGGCAGAAGAACCTTTTTAGTGTCAGTGATTGCAAGATGTACTGGCAGAGCAATGGAGATTACCTAGCTGTTAATGTAGACCGATATACTAAAACTAAAAAAAGCACATACACTGGCTTTGAGCTTTTCCGCATAAAAGAGCGAGACATACCAATTGAGGTTCTGGAGCTTGAGAATAAGAATGATAAGATTATTGCCTTTGCATGGGAGCCTAAAGGCCACAGGTTTGTAGTTATTCATGGTGAAAACCCTAAGCCTGACATTAGTATTTACTCTATGCGGACTGCTCAGCACCCTGGTCGGGTTTCAAAGCTCACTACTCTGAAAGGCAAGCAGGCAAATGCTCTGTTTTGGTCACCTGCAGGTCGCTTCATTGTACTAGCAGGTTTGAAAGGCTTAAATGGACAGTTGGAGTTTTACAATGTCGATGAACTTGAAACCATGGCAACTGCAGATCATTTTATGGCAACAGATATTGAATGGGATCCAACTGGAAGGTATGTTGCAACTGCTGTGACTTCAGTTCATGAAATGGAAAATGGTTTCAACATATGGTCTTTCAATGGCAAGCATCTTTATCGTATATTGAAGGATCACTTCTTTCAGTTCTTGTGGAGACCAAGGCCGCCATCTTTCTTGACTCCTGAGAAAGAGGAAGAGATTGCAAAGAGCTTAAAGAAGTATAGTAAGAAATATGAGGCAGAAGATCAAGATGTGTCATTGTTGCTGAGTGAGCAGGAGCGCGAGAAGCGTAGGATGTTGAAAGAAGATTGGGACAAGTGGGTTAGTGAATGGAAGCGGATGCATGAAGAAGAGAAGTTACAGAGGGAAGAGCTTAGAGATGGAGAGGCAAGTGATGAAGAGGAGGAATACGAGGCCAAGGACATTGAAGTCGAGGAAGTCATCGATGTATCTGAAGAGGTCCTTCACTTTGAGTAG 2145 0.4415 MAAVMMMMEEIKEKANRLEIDPSSIDLDSIHLPPGEDCGIVSDDEDVYQEDNLEFDSGFGNIIVVDNLPVVPKEKFEKLEGVVRKIYSQIGVIKDDGLWMPVDPETGKTVGYCFIEYNTPQEAELAKEKTHGYKLDRAHIFAVNMFDDIDRFMKVPNEWAPPETKPYTPGENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRTYWTESFVQWSPLGTYLATVHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGERYLVTYSSHEPSNPRDANRVVINIFDVRTGKVMRDFKGSADDFAIGGTGGVTGVSWPVFKWSSGDKYFARMGKNVLSVYETETFSLVDKKSLKVENIMDFSWSPTDPIIALFVPESGGGNQPARVSLIQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVNVDRYTKTKKSTYTGFELFRIKERDIPIEVLELENKNDKIIAFAWEPKGHRFVVIHGENPKPDISIYSMRTAQHPGRVSKLTTLKGKQANALFWSPAGRFIVLAGLKGLNGQLEFYNVDELETMATADHFMATDIEWDPTGRYVATAVTSVHEMENGFNIWSFNGKHLYRILKDHFFQFLWRPRPPSFLTPEKEEEIAKSLKKYSKKYEAEDQDVSLLLSEQEREKRRMLKEDWDKWVSEWKRMHEEEKLQREELRDGEASDEEEEYEAKDIEVEEVIDVSEEVLHFE* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3985 714 PIRSF Transl_init_eIF3b 7 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g3985 714 Coils Coil 1 21 - -
Lja1g3985 714 Pfam Eukaryotic translation initiation factor eIF2A 405 605 IPR013979 -
Lja1g3985 714 PANTHER BNACNNG51870D PROTEIN 6 711 - -
Lja1g3985 714 Gene3D - 56 155 IPR012677 -
Lja1g3985 714 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 6 711 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g3985 714 SUPERFAMILY DPP6 N-terminal domain-like 218 602 - -
Lja1g3985 714 Hamap Eukaryotic translation initiation factor 3 subunit B [EIF3B]. 49 712 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lja1g3985 714 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 137 IPR000504 GO:0003723
Lja1g3985 714 SMART rrm1_1 62 143 IPR000504 GO:0003723
Lja1g3985 714 CDD RRM_eIF3B 60 144 IPR034363 -
Lja1g3985 714 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 148 IPR000504 GO:0003723
Lja1g3985 714 Gene3D - 183 384 IPR015943 GO:0005515
Lja1g3985 714 MobiDBLite consensus disorder prediction 673 696 - -
Lja1g3985 714 Gene3D - 415 621 IPR015943 GO:0005515
Lja1g3985 714 SUPERFAMILY RNA-binding domain, RBD 58 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3985 Lja-Chr1 50589471 50593452 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3985 6 712 Eukaryotic Initiation Factors Gene Family AT5G27640 76.620 0.0 1167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3985 K03253 - gmx:100779711 1311.98