Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3982 ATGGACAAGGAGAAGAAGAAGCATGCTATGGCTTCCTCATCTTCTGATAACAACAAGTTATACAAAGGTGTGAGAAAGAGAAAGTGGGGAAAATGGGTTTCTGAAATCAGGCTTCCCAACAGCCGTGAACGCATTTGGTTGGGATCTTATGATTCACCTGAGAAAGCTGCACGAGCTTTTGATTGTGCTCTTTACTTACTGCGTGGCCGACATGCTAGCTTCAATTTTCCTGACACTCCTTTCAATCTTGACATCAATGTGGCTGCTGCAGCTGGTAACCAATCTCTCACTCCGCAGGAGATTCAAGAGGTTGCTGCTAAGTTTGGAAATCAATACCAACCACAACAACAACACCACCACCATCAACAAAGCTCTGATATTGCTAATTTTGAGTCCCACATCGGAAGGGAGAGTAACTTTACTACTACTGCAGCCTCGTCCTCCAACTCTACTATCACTATGCATGAGCAATGTGGGGCAACAATGCAAGTGGAAGAAAATGGAAGCATGATGAACACGATTGATTGGACATTTTTGAACGTGTTGGACAATGAGTCCAACACTAATAACAATGGTGGTATTAATCTTGGTGGTGAATATGGGCTCTATTCTTCTGAGCTAGACAAGATGCACTCTGGTGATTTTCAATTCTATTCAGCTCCACCAACAACCCCTTATGAGGATAACATTGCTGATGATCTATTCTCCAATCAATCATCATTCCTTTGGAGTTGGAACTTTTGA 744 0.4261 MDKEKKKHAMASSSSDNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDCALYLLRGRHASFNFPDTPFNLDINVAAAAGNQSLTPQEIQEVAAKFGNQYQPQQQHHHHQQSSDIANFESHIGRESNFTTTAASSSNSTITMHEQCGATMQVEENGSMMNTIDWTFLNVLDNESNTNNNGGINLGGEYGLYSSELDKMHSGDFQFYSAPPTTPYEDNIADDLFSNQSSFLWSWNF* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3982 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 247 - -
Lja1g3982 247 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lja1g3982 247 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lja1g3982 247 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lja1g3982 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 11 247 - -
Lja1g3982 247 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lja1g3982 247 Gene3D AP2/ERF domain 20 78 IPR036955 GO:0003700|GO:0006355
Lja1g3982 247 Pfam AP2 domain 21 69 IPR001471 GO:0003700|GO:0006355
Lja1g3982 247 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lja1g3982 247 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3982 Lja-Chr1 50539901 50541021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3982 10 243 AP2-EREBP Transcription Factor Family AT1G19210 38.819 2.26e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g3982 AP2 1.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3982 - - gmx:100817386 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3982 1 50539901 50541021 Lja1g3982 1 50539901 50541021 ECH
Lja1g3982 1 50539901 50541021 Lja5g2943 5 57898149 57898916 ECH