Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3978 ATGCATAGCTCTGAGTATGAGAGGAAGCAAAGATTCAAGATTTTAGTTGGAGAGTCAGATGATTTTTCATCAGCCGCCAAGGTGTTGGAGCAGCTCAGTGGCCAAACCCCTGTGTTTTCCAAAGCTAGGTACACTGTCCGTTCTTTTGGTATTAGAAGAAATGAAAAGATTGCATGCTATATTACTGTTAGAGGTGACAAGGCAATGCAGCTTTTGGAGAATGGTTTGAAGGTGAAGGAATATGGACTTCTGCGAAAAAACTTCAGTGATACTGGGTGCTTTGGCTTTGGTATTCAAGAGCATATTGATCTGGGAATAAAGTATGATCCTTCAACTGGTATATACGGCATGGATTTCTTTGTTGTTCTGGAACGCCCTGGTTACCGTGTTGGACGTCGTCGTCGGTGCAAGTCTCGTGTTGGGATCCAGCATCGTGTCACAAAAGATGATGCTATGAAGTGGTTCCAGGTGAAATATGAAGGTTTTATCCTCAACAAGGCGCAAGCGGTTTTCTAG 516 0.4341 MHSSEYERKQRFKILVGESDDFSSAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYITVRGDKAMQLLENGLKVKEYGLLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKDDAMKWFQVKYEGFILNKAQAVF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3978 171 Pfam ribosomal L5P family C-terminus 56 154 IPR031309 -
Lja1g3978 171 ProSitePatterns Ribosomal protein L5 signature. 29 45 IPR020929 GO:0003735|GO:0005840|GO:0006412
Lja1g3978 171 Gene3D - 8 167 IPR022803 -
Lja1g3978 171 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 12 170 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lja1g3978 171 Pfam Ribosomal protein L5 16 52 IPR031310 -
Lja1g3978 171 SUPERFAMILY RL5-like 20 163 IPR022803 -
Lja1g3978 171 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 11 161 IPR002132 GO:0003735|GO:0005840|GO:0006412
Lja1g3978 171 PANTHER 60S RIBOSOMAL PROTEIN L11-1 12 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3978 Lja-Chr1 50483625 50484786 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3978 12 170 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 86.875 3.11e-103 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3978 K02868 - gmx:100812386 276.174