Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3975 ATGGAGAAAGATTCTATTGAGGATATGGAAATTGAAGTTCTTCCTTCAATGTGGCCAGAAGATATTGTCACTGATGTTGGAAAACAGTTCAATATAGAGAAGCCTGGAATGGACCAAGACATGTTAGAGGATGTAATTACCACTATAGAAGAACCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTCACAAGTTTCACAGAAAAGGGCTCTTCTCAGTTAGCATACCTCATGAAACACTGGGAGTACAAGCAAGCCAACGTCGCGCGCCTTCTCCGGGAAGAACTAGACAACCTGAGCAAACAAAGGCATGATGTTGAGCTGAGGAAGTTGGAGATTTTGGAAGAGCATCGGTTCGAGGAAGAAAGATGCCCAGTTTCTATATTGGATGATGTTTATGATATATGGCTAGATGTGCCTTGCAGGAAGAGTGATTTTGTGGTTCAAAACAAGAAGATTGAAATTGATGCTGAGTATGATACTGCTATATACTGGAAAGAGCGAGCCCTGCACTTGGAAAAGCTGCTAGAGCAAAGTGTCCAGAGAGAACAGATTCTTGAAGAAAAGTTACAAGAAAGTATAGACAACATTGAAAGGCAATCCTCACCAGTGGAAGAACTCTCCCAGATCCTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTACCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATTATAGGAAAAACAGATGTTGAAATATTCACAGGAGCTGGTGTTAGGGAGTCTCAAGATTTTAAGAAAGAAGTTTTGGAAAAAGGGTTACCTGCAAAAAGGGAAATCACTTTTGAGACTGAACTATTTGGATCAAAGACATTTTTGATATATGTAGAACCTGTTTTTAGCAAGGCAGGGGAAACAATTGGAATAAATTACATGGGAATGGATGTAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTAGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAAACTATGCGAGCAAAACAAATGCTGGCAACCATGTCTCATGAGATAAGATCTCCACTGTCTGGGGTTGTAAGCATGGCTGAAATTCTTTCTACCACAAAACTTGATCATGAGCAAAGACAGCTCTTGGATGTCATGCTATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGATATACTTGATCTTTCCAAGGTTGAGTCAGGAGTTATGAAGCTAGAAGCTACCAAATTCCGACCAAGAGAGGTAGTAAAGCATGTTCTCCAGACAGCTTCAGCATCATTGCAGAAAATATTAATCTTAGAAGGACATGTGGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATTAGGCAAATTCTCACAAATTTAATCAGCAATGCCATCAAGTTTACACATGAAGGCAAAGTTGGGATAAACCTTAACATTGTGCAAGAGGCAAGTTTTGCAAAAGCTGAAGGCATTCAGAATATGACTCCAGACCATTCAACTATTTCAGTGAATGGAGTGAAAGAAGAAAAATATCTCTCAACTACTCAAAATGTCAGTGATCAAAATCTTCTTGATGGTAAAAAACATGATGACCCTTCAAGCCAAAACCATGCATTTAATGATGAATGTAGATCTCCAGTTAAAAGCGAATGCTCAATGAACGGAGCCACTGAAGAGCAACATCATTCAACTGAAACAACAATGTGGATACGTTGTGATGTATATGATACAGGCATTGGAATACCAGAAAAGGCTCTACCTACTTTATTTACAAGGTACATGCAAGTTAGTGCAGACCATGCTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGCTGAGTTGATGGGGGGTCACCTAACAGTGTCTAGCAAAGAAAACCATGGTTCTACCTTCACCTTCATACTCCCATGCAAGGTTTCAACAACTTGTGATAATTCTGATTACTCAGATGAGCTCTCGGATATGGAGAATGATGATACTTTTGATGATACAACAGAGGGTTTCTTCCAATTCCAACCATGCACCTTGGGCTCTCTGTTCTCCTCTAATGGATCTGGCAGGAGTCAGAAGTTGTTACCACACAAAATTGGGTACACAACACATAAATTCAATGTGTTTTCAGAGAGTTCATATTCACTACCCTTTAATGACATCATATCAAGAGGGACATGTTCAGTTGGTGAGGAATCTTCAGTGATCGATGCTCAAGAGATGTCTGAATCAGCTAGTTCATCTAGCCCAGAAACAAAGAGTTTAATTAGTAAAGTTGAATGGCAGAAATATAAGACTCATGCCTGGTCCTTGAATGGTAGTGAAGATTCTCATCAACCTAATAGAGAAATGGTTATAGAAATGAAGTCAAGTGAACCCCAACAGACATGTCATGGCAAAGAGAAGGCAAACACAACCACTCACTATGTTTCTAGCAGTGGTACATCAGAAGTGACCAAACCCACATTAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGGCACAATCCATGATGAAACAGTTAGGACATAGCATAGATGTGGTAAATAATGGAGCAGAAGCAGTGCGTGCAGTGCAGCACTGTACTTATGACCTGATTTTGATGGATGTATGCATGCCAATTATGAATGGTCTTCAAGCAACAAAACTGATTCGATCTTTTGAGGAAACAGGCAACTGGGATGCTGCAATAAATGCTGGAATCGAGCACAGTCTACCAGATTATGAATGTTCTGCACCATCTAAAAAGCGAGTCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCCAGTGGAATGGACTCATTTGTGTCAAAGCCTGTGACTTTCCAAAAATTGAAAGAGTGTCTTGAACAATTCCTACTGTGA 2994 0.3991 MEKDSIEDMEIEVLPSMWPEDIVTDVGKQFNIEKPGMDQDMLEDVITTIEEPTIVDFKRLMELTSFTEKGSSQLAYLMKHWEYKQANVARLLREELDNLSKQRHDVELRKLEILEEHRFEEERCPVSILDDVYDIWLDVPCRKSDFVVQNKKIEIDAEYDTAIYWKERALHLEKLLEQSVQREQILEEKLQESIDNIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVRESQDFKKEVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDVTDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSTTKLDHEQRQLLDVMLSSGDLVLQLINDILDLSKVESGVMKLEATKFRPREVVKHVLQTASASLQKILILEGHVADDVPIEVIGDVLRIRQILTNLISNAIKFTHEGKVGINLNIVQEASFAKAEGIQNMTPDHSTISVNGVKEEKYLSTTQNVSDQNLLDGKKHDDPSSQNHAFNDECRSPVKSECSMNGATEEQHHSTETTMWIRCDVYDTGIGIPEKALPTLFTRYMQVSADHARKYGGTGLGLAICKQLAELMGGHLTVSSKENHGSTFTFILPCKVSTTCDNSDYSDELSDMENDDTFDDTTEGFFQFQPCTLGSLFSSNGSGRSQKLLPHKIGYTTHKFNVFSESSYSLPFNDIISRGTCSVGEESSVIDAQEMSESASSSSPETKSLISKVEWQKYKTHAWSLNGSEDSHQPNREMVIEMKSSEPQQTCHGKEKANTTTHYVSSSGTSEVTKPTLKPKILLVEDNKINVMVAQSMMKQLGHSIDVVNNGAEAVRAVQHCTYDLILMDVCMPIMNGLQATKLIRSFEETGNWDAAINAGIEHSLPDYECSAPSKKRVPIVAMTANALSESAEECFASGMDSFVSKPVTFQKLKECLEQFLL* 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3975 997 Coils Coil 176 200 - -
Lja1g3975 997 SUPERFAMILY CheY-like 854 996 IPR011006 -
Lja1g3975 997 SMART HisKA_10 363 428 IPR003661 GO:0000155|GO:0007165
Lja1g3975 997 Gene3D PAS domain 204 340 - -
Lja1g3975 997 CDD HATPase_EvgS-ArcB-TorS-like 479 669 - -
Lja1g3975 997 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Lja1g3975 997 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Lja1g3975 997 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Lja1g3975 997 Pfam His Kinase A (phospho-acceptor) domain 365 428 IPR003661 GO:0000155|GO:0007165
Lja1g3975 997 CDD REC_hyHK_CKI1_RcsC-like 856 992 - -
Lja1g3975 997 MobiDBLite consensus disorder prediction 820 846 - -
Lja1g3975 997 MobiDBLite consensus disorder prediction 543 589 - -
Lja1g3975 997 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 462 668 IPR036890 -
Lja1g3975 997 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 1 996 - -
Lja1g3975 997 SMART HKATPase_4 474 671 IPR003594 -
Lja1g3975 997 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 474 668 IPR003594 -
Lja1g3975 997 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Lja1g3975 997 Gene3D - 429 676 IPR036890 -
Lja1g3975 997 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 362 428 IPR036097 GO:0000155|GO:0007165
Lja1g3975 997 MobiDBLite consensus disorder prediction 549 563 - -
Lja1g3975 997 SMART REC_2 854 992 IPR001789 GO:0000160
Lja1g3975 997 ProSiteProfiles Response regulatory domain profile. 855 996 IPR001789 GO:0000160
Lja1g3975 997 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 1 996 - -
Lja1g3975 997 ProSiteProfiles Histidine kinase domain profile. 370 671 IPR005467 -
Lja1g3975 997 Gene3D - 351 428 - -
Lja1g3975 997 Gene3D - 849 996 - -
Lja1g3975 997 Coils Coil 89 116 - -
Lja1g3975 997 Pfam Response regulator receiver domain 856 923 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3975 Lja-Chr1 50451082 50456537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3975 578 996 Histidine Kinase Gene Family AT5G10720 50.939 2.55e-125 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja1g3975 HATPase_c 2.6e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3975 - - gmx:100819520 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3975 1 50451082 50456537 Lja1g3975 1 50451082 50456537 ECH