Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3974 ATGGAGGCAAATTTCATGATCCGTTTAGGAGACAAAGCTCACGTTCCCATCATAACCTTCTCAGCAACAAGCCCCTCTTTAGCATTGCTCAAAAGTCCTTACTTTTTCCAAATTGCACAGAACGATTCAGCTCAAGTTAAAGCCATTTCCTCCATGGTTCAAGCTTTTGGTTGGAAACAAGTGGTGCCCATTTATGTTGACAACAGCTTTGGTGAAGGACTCATCCCTGCCTTGACCATTGCTCTGCAACAAGCCAACATCAGAGTTCCCTATTGCAGTGCCATTTCTCCTTCAGCCACTGATGAAGTCATCACTCAAGAGCTCTACAAGTTGATAACCATGCCAACCAGAGTTTTTGTTGTTCACATGTCATCACGCCTTGGCTCTCGCCTCTTTGCCATTGCAAAGAGCATTGGAATGATGGAGCAAGGCTATGTTTGGATTGTGACTGATGGCATGGCTAATTCGTTAAACTCTCTAAACTCTTATGTGGTAGAATCTATGGAAGGAGTGCTAGGTGTTCGACCTTATGTCCCAAAGAGCAAGGAGCTTGATGGTTTTAAAGCTCGATGGAAAAGGCGATTCCTTTTGGACAATCCAACACTTGATGATGCAAATTTGAATGTTTATGGAACATGGGCTTATGATGCTGCCACAACATTGGCTATGGCTGTTGAGAAGGATGGTGCCACCAGCTTCGGCCATAGCAACGCTTCAAGGAATCTGCTTGATCTTGAAGAGGTTGGTGTCTCGCAAAATGGTGAGAAGCTATGTGAGGCTCTGTTGAACACTAGATTTAAAGGCCTCAGTGGTGACTTTAGTGTTGTTGGTGGGCAATTACAAGAATCACCATTTGAGATAGTTAATGTAGTTGGTGAGGGGGAAAGGAGGGTGGGATTTTGGACACCCCAGCAAGGGATAGTAAGAAACTTGGACACAAAGGGAGCATTACCAAGCATGCATTCTACTTCTAAGAGCAATCTTGGTACTATTATATGGCCAGGGGATACTTACTCTGTTCCAAAAGGTTGGGAAATTCCTACAAGTGGGAAGAAGTTGAGAATAGGAGTTCCAGTGAAAAAGGGAGATAGTTACTCTGAATTTGTGAAAATAACACATGACACAAGTACCAATTCAACAGTGGTAACTGGCTTCTGCATTGATGTGTTCAAAGCCGTGCTAGAAGCATTTCCTTTTGCCTTACCTTATGAATTTATTCCATTTGAAAAGCCTGATGCTGAGATGGCAGGAACATATAATGAGTTGATCAGCCAAGTATATTATGGGAATTATGATGCAGTGGTGGGGGATACCACGATCATTGCAAACAGGTCTAACTATGTCGATTTCACAATGCCATATACAGAATCTGGTGTCACAATGGTTGTTCCAGTGAAACACAACAGAAAGAAGAATGCTTGGGCCTTTCTGAAGCCTCTGACGTGGGATCTTTGGGTAACAACTGCTTGTTCATTCATATTCATAGGGTTTGTGGTTTGGGTCCTTGAACACCGAATAAACAACAGTTTCAGGGGGCCTCCCTCCCACCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAATAATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGGCTGTGTGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGCTACACTGCAAGCCTCACTTCCTTCTTAACAGTTGAACAACTACGCCCAATTATTACTGATGTCCATCAACTACTAACGAATAGGATGAATGTTGGTTATCTCCAAGGTTCATTTGTTTATGGAATCTTAAAGGACTTGGGATTCCATGATGACCAGCTCAAAACTTATAATACCCCCGAAGAATGCAATGAGCTTTTCATAAAAGGAAGTGCAAATGGTGGCATTGCTGCTGCGTTTGATGAAATTCCCTACGTGATATTGTTTCTTGGAAAAAATTGCGGCTCCAAATATACCACAATTGAACCAAGATTTAAAACTGGAGGCTTTGGCTATGTGTTCCCAAAAGGCTCCCCTCTCGTAGCCGATATTTCAAGAGCAATCCTGAATGTGACTCAGGGAGACAAAATGAAAACAATTGAGAATGCATGGTTCAAGAAAAGCACTTGTCTAGATTCCACTACGGATATTTCCTCGGTGTATAGTCTTGGCCTTGAAAGCTTCTGGGGTTTGTTTCTTGTTGTAGGGATTGCTTCCCTATTTGCACTCCTAATCTTTGCAGTGACATTCCTATATCAGCACAGACATATCTGGTTACACTATGATCCTAGTACTTCAATATGGAGACGTATTGGTATCTTGGTTAGGATATTTGACGGAAGAGACTTGGAAAGTCACACATTCAAGAAAAGTGAAACTAGTAGTCCTATTTATAACATAGGTGCAGTTGAGACCGCCCCAAGTACACATTGCCCACCTAGTCCATCTAGTCAATCTGAATCAAACTTTACCTTTCATGGAGACTTAAGTCTAGATTATGGTGATACTAAACAACATCGTGGTGCTAATTGTCAGGACAGAGAAATGAATGTCGGGTAA 2553 0.423 MEANFMIRLGDKAHVPIITFSATSPSLALLKSPYFFQIAQNDSAQVKAISSMVQAFGWKQVVPIYVDNSFGEGLIPALTIALQQANIRVPYCSAISPSATDEVITQELYKLITMPTRVFVVHMSSRLGSRLFAIAKSIGMMEQGYVWIVTDGMANSLNSLNSYVVESMEGVLGVRPYVPKSKELDGFKARWKRRFLLDNPTLDDANLNVYGTWAYDAATTLAMAVEKDGATSFGHSNASRNLLDLEEVGVSQNGEKLCEALLNTRFKGLSGDFSVVGGQLQESPFEIVNVVGEGERRVGFWTPQQGIVRNLDTKGALPSMHSTSKSNLGTIIWPGDTYSVPKGWEIPTSGKKLRIGVPVKKGDSYSEFVKITHDTSTNSTVVTGFCIDVFKAVLEAFPFALPYEFIPFEKPDAEMAGTYNELISQVYYGNYDAVVGDTTIIANRSNYVDFTMPYTESGVTMVVPVKHNRKKNAWAFLKPLTWDLWVTTACSFIFIGFVVWVLEHRINNSFRGPPSHQIGTSLWFSFSIMVFSHREKVVSNLARFVVAVWVFVVLILVQSYTASLTSFLTVEQLRPIITDVHQLLTNRMNVGYLQGSFVYGILKDLGFHDDQLKTYNTPEECNELFIKGSANGGIAAAFDEIPYVILFLGKNCGSKYTTIEPRFKTGGFGYVFPKGSPLVADISRAILNVTQGDKMKTIENAWFKKSTCLDSTTDISSVYSLGLESFWGLFLVVGIASLFALLIFAVTFLYQHRHIWLHYDPSTSIWRRIGILVRIFDGRDLESHTFKKSETSSPIYNIGAVETAPSTHCPPSPSSQSESNFTFHGDLSLDYGDTKQHRGANCQDREMNVG* 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3974 850 Pfam Receptor family ligand binding region 2 291 IPR001828 -
Lja1g3974 850 SUPERFAMILY Periplasmic binding protein-like I 4 335 IPR028082 -
Lja1g3974 850 Pfam Bacterial extracellular solute-binding proteins, family 3 379 704 IPR001638 -
Lja1g3974 850 PIRSF IGluLR_plant 1 836 IPR017103 -
Lja1g3974 850 CDD PBP1_GABAb_receptor_plant 1 311 IPR044440 -
Lja1g3974 850 Pfam Ligand-gated ion channel 705 736 IPR001320 GO:0015276|GO:0016020
Lja1g3974 850 Gene3D - 255 352 - -
Lja1g3974 850 Gene3D - 353 472 - -
Lja1g3974 850 PANTHER GLUTAMATE RECEPTOR 2.9 1 805 - -
Lja1g3974 850 CDD GluR_Plant 351 703 - -
Lja1g3974 850 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 805 - -
Lja1g3974 850 Gene3D - 654 710 - -
Lja1g3974 850 Gene3D - 43 206 - -
Lja1g3974 850 SUPERFAMILY Periplasmic binding protein-like II 329 706 - -
Lja1g3974 850 SMART GluR_14 354 705 IPR001320 GO:0015276|GO:0016020
Lja1g3974 850 Gene3D - 473 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3974 Lja-Chr1 50446780 50450294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3974 1 818 Ion Channels AT2G29120 52.358 0.0 823
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3974 K05387 - pvy:116139285 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3974 1 50446780 50450294 Lja1g3974 1 50446780 50450294 ECH