Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3972 ATGGTTAAGAATAATTTTATTAAATTTGTTTACTCTCTGATAATCTTTTATTCTTGGTCTCTAAGTTTCATGATCATGGGCATGGCACAAAGAAACGAGACAGTGATGGTGAAAGTGGGAGGTGTTATTGATCTTACTGGAATGGTTGGGAAGATGGGGTTGAGTTGCATCAACATGTCCCTTTCAGATTTCTATCTTTCTCATCCTCATTACAACACTAGGATCCAATTCAGCTTCAGGGATTCTCATGGAGACGTTGTTACTGCTGCTGCACAAGCTTTGGAACTCATACAAAATGAGCAAGTGCAAGCTATCCTTGGTCCTGTAACAACAATGGAGGCAAATTTCATGATCCATTTAGGAGACAAAGCTCACCTGCCTATCATAACCTTTTCAGCAACAAGCCCCTCTTTATCAATGCTCAAAAGTCCTTATTTTTTCCAAATTGCACACAATGATTTAGCTCAAGTGAATGCCATAACCTCCATGGTTCAAGCTTTTGGTTGGAAACAAGTGGTGCCCATTTATGTTGACAACAGCTTTGGTGAAGGACTCATCCCTTCCTTAACCATTTCTCTGCAACAAGCCTATATCAGAGTAGTTCCCTATTGCAGTGCCATTTCTCCTTCAACCACTGATGAAGTCATCAATCATGAGCTCTACAAGTTGAGGACCATGCCAACTAGAGTCTTTGTTGTTCACATGTCACCGCGCCTTGGCTCTCGCCTCTTTGCCATTGCGAAGAGCATTGGAATGATGGAACAAGGCTATGTTTGGATTGTAACTGATGGCATTGCTAATTTGTTAAACTCTCTAAACTCATCCGTGGTAGAATCTATGGAAGGTGTGCTAGGCGTTCGACCTTATGTCCCAAAGACCAAAGAGCTTGATCATTTTAAAGCTCGATGGAAAAGACGGTTCCTTTTGGATAATCCAACACTTGGTGATGTGAATTTGAATGTTTTTGGAACATGGGCTTATGATGCTGCCACTGCATTGGCTATGGCTGTTGAGAAGGTTGGTGCCACCAGCTTTGGCCATAGCAACGCTTCAAGGAATTTGCTTGATCTTGAAGAGGTTGGTGTCGCGCGAAGTGGTGAGAAGCTACGTGAGGCTCTGTCGAACACTAGATTCAGAGGTCTAAGTGGTGATTTCAATGTTGTTGGTGGAGCACTACAAGCATCAACACTTGAGATAGTTAATGTGATTGGTGAGGGGGGAAGGAGGGTGGGATTTTGGACACCCCAGAAGGGGATAGCAAGAAACATGGACACAAAGGGAGCATTACCAATCATATATTCTACTTCTAAGAGCAATCTTGGTACTATTATATGGCCAGGGGATACTTACTCTGTTCCAAAAGGTTGGGAAATTCCTACAAGTGGGAGGAAGTTGAGGATAGGAGTTCCAGTGAAAACGGGAGATAGTTACACTGAATTTGTGAAAATAACACATGACACAACTACCAATTCAACAGTGGTAACTGGCTTTTGCATTGATGTGTTCAAAGCCGTGCTAGAAGCATTGCCTTTTGCCTTACCTTATGAATTTATTCCATTTGAAAAGCCTGATGGTGAGATGGCAGGAACATATAATGAGTTGATCAGCCAAGTTTATTATGGGAATTTTGATGTCGTGGTGGGGGATACAACGATCATTGCAAACAGGTCCAACTATGTTGATTTCACAATGCCTTATACAGAATCTGGTGTAACAATGGTTGTTCCAGTGAAAGACAAAAGGAAGAAGAATGCTTGGGCCTTTATGAAGCCTCTAACATGGGATCTTTGGGTGACATCTGCTTGTTCATTCATATTCATTGGATTTGTGGTTTGGGTCCTTGAACACCGAATGAACAGAAGTTTCAGGGGACCTCCCTCCCATCAGATTGGCACAAGCTTATGGTTTTCCTTCTCAATCATGGTGTTTTCCCATCGGGAGAAAGTGGTGAGCAACTTGGCTAGATTTGTGGTGACTGTATGGGTTTTTGTGGTTCTAATTCTGGTTCAAAGTTACACGGCGAGCCTCTCTTCCCTCTTAACAGTTGAACAACTACGCCCAACTATTACTGATGTCCATCAACTACTACAGAATAGGATGAATGTTGGCTATCTCCAAGGTTCATTTGTTTATGGAATCTTAAAGGGCTTGGGCTTCCCAGATGACCAGCTCAAAACTTATAAATCCCCAGAAGAATGCAATGAGCTTTTCATAAAAGGAAGTGCAAATGGTGGCATTGATGCTGCATTTGATGAAGCTCCCTACGTGATGAACTTTCTTGCAAGAAATCACTGCTCCAAATATACCACAGTCGAACCAAGATTTAAAACTGGAGGCTTTGGCTATGTATTCCCAAAAGGCTCCCCTCTTGTAGCTGACATTTCAAGAGCAATCCTGAATGTGACTCAGGGAGACGAACTGAAAACAATTGAGAACGCATGGTTCAAGAAAGGCATTTGTCTAGAGTCTAGTACAGAAATTTCCTCTATGCCTAGTCTTGGCCTTGAAAGCTTCTGGGGTTTGTTTCTTGTTGCAGGGATTGCTTCTCTATTAGCACTCCTGATCTTTGCAGTGACATTCCTATATCAGCACAGACATATCTGGTTACACTACGATCCTAGTACTTCAATATGGAGACGTATTGGTATCTTGGTTAGGATATTTGACCAAAGAGACTTGGAATGTCACACATTCAAGAAAAGTGAAACTAGTAGTCCTATTCATAACATAGGTGCAGTTGAGACCACCCCAAGTACACATTGTCCACCTAGTCCATGTAGTCAATCTGAATCAAACTTTGCCTTTCCTGGAGATTTAAGTCCAGATTATGGTGATACTAAACAACAGGGTGATGCTAATTGTCAAGATAAAGAAATGAATGTCGTGTAA 2889 0.4188 MVKNNFIKFVYSLIIFYSWSLSFMIMGMAQRNETVMVKVGGVIDLTGMVGKMGLSCINMSLSDFYLSHPHYNTRIQFSFRDSHGDVVTAAAQALELIQNEQVQAILGPVTTMEANFMIHLGDKAHLPIITFSATSPSLSMLKSPYFFQIAHNDLAQVNAITSMVQAFGWKQVVPIYVDNSFGEGLIPSLTISLQQAYIRVVPYCSAISPSTTDEVINHELYKLRTMPTRVFVVHMSPRLGSRLFAIAKSIGMMEQGYVWIVTDGIANLLNSLNSSVVESMEGVLGVRPYVPKTKELDHFKARWKRRFLLDNPTLGDVNLNVFGTWAYDAATALAMAVEKVGATSFGHSNASRNLLDLEEVGVARSGEKLREALSNTRFRGLSGDFNVVGGALQASTLEIVNVIGEGGRRVGFWTPQKGIARNMDTKGALPIIYSTSKSNLGTIIWPGDTYSVPKGWEIPTSGRKLRIGVPVKTGDSYTEFVKITHDTTTNSTVVTGFCIDVFKAVLEALPFALPYEFIPFEKPDGEMAGTYNELISQVYYGNFDVVVGDTTIIANRSNYVDFTMPYTESGVTMVVPVKDKRKKNAWAFMKPLTWDLWVTSACSFIFIGFVVWVLEHRMNRSFRGPPSHQIGTSLWFSFSIMVFSHREKVVSNLARFVVTVWVFVVLILVQSYTASLSSLLTVEQLRPTITDVHQLLQNRMNVGYLQGSFVYGILKGLGFPDDQLKTYKSPEECNELFIKGSANGGIDAAFDEAPYVMNFLARNHCSKYTTVEPRFKTGGFGYVFPKGSPLVADISRAILNVTQGDELKTIENAWFKKGICLESSTEISSMPSLGLESFWGLFLVAGIASLLALLIFAVTFLYQHRHIWLHYDPSTSIWRRIGILVRIFDQRDLECHTFKKSETSSPIHNIGAVETTPSTHCPPSPCSQSESNFAFPGDLSPDYGDTKQQGDANCQDKEMNVV* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3972 962 Pfam Ligand-gated ion channel 817 848 IPR001320 GO:0015276|GO:0016020
Lja1g3972 962 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 37 914 - -
Lja1g3972 962 Gene3D - 366 465 - -
Lja1g3972 962 Gene3D - 585 712 - -
Lja1g3972 962 SUPERFAMILY Periplasmic binding protein-like II 441 819 - -
Lja1g3972 962 CDD GluR_Plant 463 815 - -
Lja1g3972 962 SMART GluR_14 466 817 IPR001320 GO:0015276|GO:0016020
Lja1g3972 962 Gene3D - 466 584 - -
Lja1g3972 962 SUPERFAMILY Periplasmic binding protein-like I 37 447 IPR028082 -
Lja1g3972 962 CDD PBP1_GABAb_receptor_plant 38 423 IPR044440 -
Lja1g3972 962 MobiDBLite consensus disorder prediction 936 962 - -
Lja1g3972 962 PIRSF IGluLR_plant 6 933 IPR017103 -
Lja1g3972 962 Pfam Bacterial extracellular solute-binding proteins, family 3 491 816 IPR001638 -
Lja1g3972 962 Gene3D - 155 317 - -
Lja1g3972 962 Gene3D - 713 817 - -
Lja1g3972 962 Pfam Receptor family ligand binding region 57 403 IPR001828 -
Lja1g3972 962 PANTHER GLUTAMATE RECEPTOR 2.9 37 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3972 Lja-Chr1 50415652 50426531 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3972 9 930 Ion Channels AT2G29120 50.858 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3972 K05387 - pvy:116139285 1084.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3972 1 50415652 50426531 Lja1g3972 1 50415652 50426531 ECH