Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3965 ATGGCTTCCAAGCTCTGCGACTCATGCAAATCCGCCACCGCCACCCTCTACTGCCGCCCGGACTCCGCCTTCCTCTGCGCCCCCTGCGACTCCAAAGTCCACGCCGCCAACAAGCTCGCCTCCCGCCATCCACGTGTCACTCTCTGCGAAGTCTGCGAGCAAGCCCCCGCTAGCCTCACATGCAAGGCCGATGCCGCCAACCTCTGCCTCTCCTGCGACCATGACATCCACTCCGCCAACCCCCTCGCCGCCCGCCACGAACGTTCCCCCGTCACTCCCTTCTTCCACTCCCCCGCCGCCAACTTCCTCGACCACCAACACTTGTTCACAGATGCAAAACCAGAACCAGAAGCAGAAGCAGCAGAAGAAGAGGAAGAGGCTGAAGCTGCTTCCTGGTTGCTCCCGACTCCCAAGGAAGCAGATCTGTTCTCCGAATCAGATCCACTCCATTTCCTAGATCTGGAACAGAAAATCAGCGACTGCGTTGTTCCGGTGAACAGCAATTTGAACCATATCCTTCCATCACAGTCACATTCACAATCGCAGAGTGTATCGTCGTGTTCGATGGAGGTAGGGGTTGTACCGGAAGGGAGCACGAGCGCGAGCACGGTGGTGTCGGAGATATCGAACGGTGGCGGTGGTTACGAGAGAGCGGTGGATAGGGAAGCGAAGGTGATGAGGTACAGGGAGAAGAGGAAGAATAGAAGGTTCGAGAAGACGATACGTTACGCTTCGAGGAAAGCGTATGCGGAAAGCAGACCGAGGATCAAAGGCAGGTTTGCGAAACGCTCTGATGATAATAACAATGCTGATCTTCCTGCTGCTGGTGCTACTGGATATGATGGTCTTGTTCCAACTTGTTGA 864 0.5602 MASKLCDSCKSATATLYCRPDSAFLCAPCDSKVHAANKLASRHPRVTLCEVCEQAPASLTCKADAANLCLSCDHDIHSANPLAARHERSPVTPFFHSPAANFLDHQHLFTDAKPEPEAEAAEEEEEAEAASWLLPTPKEADLFSESDPLHFLDLEQKISDCVVPVNSNLNHILPSQSHSQSQSVSSCSMEVGVVPEGSTSASTVVSEISNGGGGYERAVDREAKVMRYREKRKNRRFEKTIRYASRKAYAESRPRIKGRFAKRSDDNNNADLPAAGATGYDGLVPTC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3965 287 MobiDBLite consensus disorder prediction 254 278 - -
Lja1g3965 287 SMART bboxneu5 1 48 IPR000315 GO:0008270
Lja1g3965 287 SMART bboxneu5 49 91 IPR000315 GO:0008270
Lja1g3965 287 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Lja1g3965 287 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Lja1g3965 287 CDD Bbox1_BBX-like 5 48 - -
Lja1g3965 287 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 286 IPR045281 GO:0009909
Lja1g3965 287 Pfam CCT motif 221 263 IPR010402 GO:0005515
Lja1g3965 287 ProSiteProfiles CCT domain profile. 221 263 IPR010402 GO:0005515
Lja1g3965 287 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 286 - -
Lja1g3965 287 Pfam B-box zinc finger 4 47 IPR000315 GO:0008270
Lja1g3965 287 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Lja1g3965 287 CDD Bbox1_BBX-like 48 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3965 Lja-Chr1 50323674 50324964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3965 1 286 C2C2-CO-like Transcription Factor Family AT5G24930 49.864 5.02e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lja1g3965 zf-B_box 5.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3965 - - gmx:100794431 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3965 1 50323674 50324964 Lja1g3965 1 50323674 50324964 ECH