Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3964 ATGGGCTATCTCAATTCAGTTTTGTCATCTTCAAGCCAGGTTCATTCCGCCGATGATGCTCCGGTCAGCGGCGGTGGTCTCAGTCACAATGGCAAATTCAGCTATGGGTATGCTAGCTCTGTTGGCAAGAGAGCTTCGATGGAAGATTTTTATGAGACAAGAATTGATGGTGTTGATGGTGAAATTGTTGGCCTTTTTGGAGTTTTTGATGGTCATGGTGGGGCTCGTGCTGCTGAGTATGTGAAGAAAAATCTGTTTAGTAATTTGATCAGTCACCCAAACTTCATTTCTGACACCAAATCTGCAATAGCTGATGCATATAACCATACCGACTCTGAATTTCTGAAATCGGAAAATAGTACTCATAGTAGAGATGCTGGCTCTACTGCTTCCACTGCCATTCTAGTTGGTGACCGGTTGCTTGTTGCAAATGTTGGGGACTCCAGGGCTGTTATATGCAGGGGCGGTAACGCAATTGCTGTTTCGCGAGATCACAAGCCAGACCAAACTGATGAGAGGCAAAGGATTGAAGATGCAGGAGGCTTTGTTATGTGGGCTGGAACTTGGAGAGTTGGAGGTGTTCTTGCTGTTTCTCGTGCATTTGGCGATAGACTACTGAAGCAATATGTTGTTGCTGATCCAGAAATCCAGGAAGAAAAAGTTGACACTTCTCTTGAGTTTCTTATCTTGGCTAGTGATGGGCTATGGGATGTTGTCTCAAATGAGGAAGCTGTTGCTATGATTAAACCGATTGAGGATGCAGAGGAGGCAGCAAAGAGACTGATGCAAGAAGCATATCATAGAGGTAGTGCTGACAATATCACATGTGTTGTTGTTCGTTTCTCGATGAACAAAGACGTTCCTTCTCAAGGTAGCTCCGAGGTTGTGCATTGA 894 0.4463 MGYLNSVLSSSSQVHSADDAPVSGGGLSHNGKFSYGYASSVGKRASMEDFYETRIDGVDGEIVGLFGVFDGHGGARAAEYVKKNLFSNLISHPNFISDTKSAIADAYNHTDSEFLKSENSTHSRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDTSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEEAAKRLMQEAYHRGSADNITCVVVRFSMNKDVPSQGSSEVVH* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3964 297 ProSiteProfiles PPM-type phosphatase domain profile. 34 281 IPR001932 -
Lja1g3964 297 Pfam Protein phosphatase 2C 63 274 IPR001932 -
Lja1g3964 297 SMART PP2C_SIG_2 28 281 IPR001932 -
Lja1g3964 297 CDD PP2Cc 33 281 IPR001932 -
Lja1g3964 297 Gene3D - 26 287 IPR036457 -
Lja1g3964 297 PANTHER PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE TYPE 2C 3 287 - -
Lja1g3964 297 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Lja1g3964 297 SMART PP2C_4 24 279 IPR001932 -
Lja1g3964 297 PANTHER ALPHABET, ISOFORM E-RELATED 3 287 - -
Lja1g3964 297 SUPERFAMILY PP2C-like 29 282 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3964 Lja-Chr1 50299264 50303562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3964 1 281 PP2C-type Phosphatase Gene Family AT4G31750 91.815 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3964 K17506 - gmx:100797070 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3964 1 50299264 50303562 Lja1g3964 1 50299264 50303562 ECH