Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3961 ATGTCGATAATAGAACTTCACCCCCAATTCCTCTTCTCTCAAAACCCCATCCCAAAACCCTTCCAAAACCCTACCTTCAATCTCAGAATCAAACCATTAACATCAATCGCCCAATTTTCTCAGCAACCAAACACCCTCCCAGACCGAGGCCTCATTTTCCGGGAAAAATCACTCTACCTCCACAAACTCAACATCAACCCAGAAAAAGCATTCCGACAGAATCCCACCCTCCGAACTTGCCCCCTCACCACCCTCAAATCCGTGGAACGATGCCTCTCTTCAATGGGTATTCCCCGCACCGCCATGGGTCGCATCCTCGACATGCTTCCTCAGCTTCTCACACGCGACCCTCACAGGGACCTCTACCCCATCCTCGATTTCCTCCTCCATGAGGTTCGAATCCCTTACCCCGATGTTCAGAAATCGATTTTACGATGCCCCAGATTGCTGGTTTCAAGCGTGGAGGAGCGTTTAAGACCCTCGCTTTGTTTTCTTAGGGAGTTAGGGTTTGTTGGGCCGCATTCGCTTACTTGCCAGACGACTTTGCTTCTGGTTTCAAGTGTTGAGGATACCCTTTTGCCTAAAGTTGAGTTCTTGAGAGGTTTGGGGTTCACTCGTTTGGAGGTTTCGAATATGATTGTTAGATCGCCTGCTTTGTTGACATTGAGTGTGGTGAATAATTTGGCGCCGAAGGTGGAGTTTTTCTTGAAGGAGATGAATGGGGATGTTGCTGAGCTTAAGAGGTTTCCTCAGTATTTCTCTTTTAGCTTGGAAGGGAGGATTAAGCCACGCCACGCGTTGTTGGTTCGGCATGGTGTGTCTCTCTCTTTGCAGCAAATGTTGCAGGTCAGTGATGGCGGGTTGGAAGATAGGTTGTTTGAAATGCGGTTGCGCGGGCTTGTGGGAAGACAAAGCCACAGTCCTCCAACTGTGCCGGCGAGTCTGTCACTGTCACCACCCGAGCCTCGCCTTGCCATAATCAACCCCAGACCTGCTTCATTTCTTCCTCAGAGGTCACCTCCCATGACTGTGACATTATAA 1041 0.4957 MSIIELHPQFLFSQNPIPKPFQNPTFNLRIKPLTSIAQFSQQPNTLPDRGLIFREKSLYLHKLNINPEKAFRQNPTLRTCPLTTLKSVERCLSSMGIPRTAMGRILDMLPQLLTRDPHRDLYPILDFLLHEVRIPYPDVQKSILRCPRLLVSSVEERLRPSLCFLRELGFVGPHSLTCQTTLLLVSSVEDTLLPKVEFLRGLGFTRLEVSNMIVRSPALLTLSVVNNLAPKVEFFLKEMNGDVAELKRFPQYFSFSLEGRIKPRHALLVRHGVSLSLQQMLQVSDGGLEDRLFEMRLRGLVGRQSHSPPTVPASLSLSPPEPRLAIINPRPASFLPQRSPPMTVTL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3961 346 SMART mt_12 68 98 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 SMART mt_12 174 205 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 SMART mt_12 243 274 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 SMART mt_12 210 242 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 SMART mt_12 103 135 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 SMART mt_12 140 171 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 Pfam mTERF 137 285 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 Pfam mTERF 91 167 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 Gene3D Transcription termination factor 3, mitochondrial 53 294 IPR038538 -
Lja1g3961 346 PANTHER CGI-12 PROTEIN-RELATED 35 299 IPR003690 GO:0003690|GO:0006355
Lja1g3961 346 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTIC 35 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3961 Lja-Chr1 50260446 50263342 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja1g3961 mTERF 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3961 K15032 - gmx:100794204 378.637