Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3951 ATGGGAATATATCTCAGCACTCCCAAGACAGAAAAGTTTTCTGAAGATGGTGAAAATGACCGCCTTAGATATGGTTTATCATCTATGCAAGGGTGGCGTGCAACTATGGAAGATGCTCATGCTGCATATACTGATCTGGATGAGTCCACTTCGTTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAATTTTGTGCCAAGTTTCTTCACCAACAGATGCTCAAAAGTAAAGCATACTTAGCTGGAGACATAGGAACCTCTCTGCAGAAAGCTTTTTTAAGGATGGACGAGATGATGCGTGGTCAAAAGGGATGGAGGGAACTATCAATTTTGGGGGATAAGATAAACAAGTTTACTGGAATGATAGAAGGGTTGATTTTGTCCCCACGAACCGGTGATGGTGATATCCAAGTTGATGATTGGGTTTCTGAGGAGGGGACTCACTCTGATTTTTCTGGACCAACATCTGGAAGCACCGCGTGTGTTGCAGTTATTAGAAACAAACAACTTGTTGTTGCAAATGCTGGTGATTCACGTTGTGTAATATCTAGGAATGGTCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAATGAAAGAATCTTAAAAGCTGGGGGCTTTATTCATGCAGGACGAGTTAATGGCAGTTTAAATCTTGCAAGAGCTATCGGTGACATGGAATTTAAACAAAACAAATTTCTTCCTGCTGAAAAGCAAATTGTGACTGCCAATCCAGATATAAACACTGTCGAACTTTGTGATGAAGATGAATTTTTGGTGCTAGCTTGTGATGGCATATGGGATTGCATGTCAAGTCAGCAGTTGGTAGAATTTGTTCATGAACAATTGCGCTCGGAAACGAAACTTTCAGCAGTGTGTGAAAGAGTGCTTGACCGGTGTTTAGCACCATCAACTGCTACTGGCGAGGGATGTGATAACATGACCATGATCTTGGTGCAGTTCAAAAGACCACAGTCCAGTGCACCAGCACAAGAGCAATCCTCATCACCTGAATCTGAACCAAAACCAGAAAGAAGTTCAATTTAA 1071 0.4174 MGIYLSTPKTEKFSEDGENDRLRYGLSSMQGWRATMEDAHAAYTDLDESTSFFGVYDGHGGKVVAKFCAKFLHQQMLKSKAYLAGDIGTSLQKAFLRMDEMMRGQKGWRELSILGDKINKFTGMIEGLILSPRTGDGDIQVDDWVSEEGTHSDFSGPTSGSTACVAVIRNKQLVVANAGDSRCVISRNGQAYNLSRDHKPDLEIENERILKAGGFIHAGRVNGSLNLARAIGDMEFKQNKFLPAEKQIVTANPDINTVELCDEDEFLVLACDGIWDCMSSQQLVEFVHEQLRSETKLSAVCERVLDRCLAPSTATGEGCDNMTMILVQFKRPQSSAPAQEQSSSPESEPKPERSSI* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3951 356 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Lja1g3951 356 Pfam Protein phosphatase 2C 141 314 IPR001932 -
Lja1g3951 356 SMART PP2C_4 13 327 IPR001932 -
Lja1g3951 356 PANTHER PROTEIN PHOSPHATASE 2C 1 340 IPR015655 GO:0004722|GO:0006470
Lja1g3951 356 CDD PP2Cc 23 329 IPR001932 -
Lja1g3951 356 ProSiteProfiles PPM-type phosphatase domain profile. 23 329 IPR001932 -
Lja1g3951 356 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 340 - -
Lja1g3951 356 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Lja1g3951 356 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Lja1g3951 356 MobiDBLite consensus disorder prediction 330 356 - -
Lja1g3951 356 Gene3D - 1 330 IPR036457 -
Lja1g3951 356 SMART PP2C_SIG_2 28 329 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3951 Lja-Chr1 50111756 50118463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3951 1 342 PP2C-type Phosphatase Gene Family AT2G25070 76.608 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3951 K17499 - gmx:100787778 618.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3951 1 50111756 50118463 Lja1g3951 1 50111756 50118463 ECH