Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3950 ATGCATCATTTGTCAACTGATTTTTACGAAACCTTGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCCTCTCAGCATGTAGGGTTATGGCTGGGAACCTTTGACACACCAGAAGAGGCAGCAAGGGCTTATGATGAAGCAGCTAGAACCAACTTTGCATCACCAGAAAACCAACAAAACCAGGCTCTGATGATGCCCTTTCAAATCTGCAGAGCATCAAGGACAGGGTCAGTGATTGCAACTCATCAAAGAGCAGGCTTGGTACCAGGGATCACCGTTTGGCTTGTTCCCTGTGTGAGATTTTGTTCCATTGCAAACTCATTAGCTGCTTCACGGGAGTGCCATTTTCTCGCTGTCTTCAACTTTGGGGACTCCAATTTTGACGCCGGAGGCCCAGTATGCAAAAAGCCACGAGATGCACCAGCTGTGATCAAGTGGCACATATCTACTCTTTGTGATGCATCATCTGTGATTAAGTATGTAAAAAGCCATAAGAAGTCTACAGCCAGCATCAAATTTCAGCAAACATTTTTTGCAATGAAGTTAGCACTAAGTGCTGCTTAA 567 0.4533 MHHLSTDFYETLPSGRWVAEIKDSSQHVGLWLGTFDTPEEAARAYDEAARTNFASPENQQNQALMMPFQICRASRTGSVIATHQRAGLVPGITVWLVPCVRFCSIANSLAASRECHFLAVFNFGDSNFDAGGPVCKKPRDAPAVIKWHISTLCDASSVIKYVKSHKKSTASIKFQQTFFAMKLALSAA* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3950 188 Pfam AP2 domain 14 51 IPR001471 GO:0003700|GO:0006355
Lja1g3950 188 Gene3D AP2/ERF domain 10 61 IPR036955 GO:0003700|GO:0006355
Lja1g3950 188 CDD AP2 13 54 IPR001471 GO:0003700|GO:0006355
Lja1g3950 188 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 13 57 - -
Lja1g3950 188 ProSiteProfiles AP2/ERF domain profile. 2 49 IPR001471 GO:0003700|GO:0006355
Lja1g3950 188 SUPERFAMILY DNA-binding domain 13 52 IPR016177 GO:0003677
Lja1g3950 188 SMART rav1_2 13 60 IPR001471 GO:0003700|GO:0006355
Lja1g3950 188 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3950 Lja-Chr1 50110778 50111934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3950 13 60 AP2-EREBP Transcription Factor Family AT5G19790 62.069 7.95e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja1g3950 AP2 3.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3950 K09286 - psom:113305144 79.3369