Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3945 ATGTCGACTCGATCGACCGGAGCCATAAGCCAGGACTGGGAACCAGTGGTGCTGCACAAATCGAAGCCCAAGGCGCAGAACCTGCGGAACCCCAAGGCCGTGAACCAGGCGATGCGGACCGGCACAGAGGTACAGACAATGAAGAAATCTGACGCCGGATCCGATAGGAAAACCGCTGGCCCGGTCGCGAATGCGAGGAAGCTTGACAAGGCCGCAGAGCTGGCGGCGCTGGAGCGCGTGGCGGGGGAGGTGAGGCACGCGATTCAAAAGGCGCGTTTGGAGAAGATGAGCCAGATGGTGCAGGAGTATGAGAATGGTAGGGCGGTTCCGAATCAAAAGGTGCTCGCGAAGATGGAGTGGGTGCTCGGGGAGGAAGCTGAAGATATTGAAAGGTGGAGGTTGTGGATGATGGAGGATTCAGGAAGTTAG 429 0.5828 MSTRSTGAISQDWEPVVLHKSKPKAQNLRNPKAVNQAMRTGTEVQTMKKSDAGSDRKTAGPVANARKLDKAAELAALERVAGEVRHAIQKARLEKMSQMVQEYENGRAVPNQKVLAKMEWVLGEEAEDIERWRLWMMEDSGS* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3945 142 Gene3D - 93 129 IPR010982 GO:0003677
Lja1g3945 142 ProSiteProfiles Cro/C1-type HTH domain profile. 98 129 IPR001387 -
Lja1g3945 142 MobiDBLite consensus disorder prediction 1 63 - -
Lja1g3945 142 Coils Coil 74 94 - -
Lja1g3945 142 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 128 - -
Lja1g3945 142 MobiDBLite consensus disorder prediction 28 48 - -
Lja1g3945 142 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Lja1g3945 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3945 Lja-Chr1 50023572 50024036 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lja1g3945 MBF1 1.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3945 K03627 - tcc:18588625 161.384