Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3935 ATGGAACCAACAACCTGCAGCGTGGTGGACACTTCTCTGAACCTCAACGTTGCTCCTTCTTGGGACACAGTTGTTGACGTTTCGGTTTTGGTTGAAGAGTTAGAGCGTCTGAATAGTGAGAATAAGAGGTTAACTGAGACGCTGAACCACATATGCGACAACTATCTCACCATGCAAAAACATTTAGCCCAACTCAACAGTAACAGCCCGGATGATTTTGAAAAAGAAGCAGGGATACCATCGCGGAAGAGAAAGGCTGAGAATCTGTTTGTTTATGGTAGCAGTGGCTATACTGAGTGCAGCACCATTACTGAGGAGGAGGATACAATATTCAAAAGGCCTAGCACTTCGCCAAAGGTTTCCAAGGTTCTTGTTCGGACTGAAGCATCTGATACCAGCTTATATGTGAGAGATGGATATCAGTGGAGAAAATATGGTCAGAAAGTTACCAGAGATAACCCCTCTCCTAGGGCTTACTTCAAGTGCTCTTACGCCCCTAGCTGCCCTGTCAAGAAGAAGGTGCAAAGAAGTGTAGAAGACCCTACCATATTGGTAACAACTTATGAAGGAGAGCACAATCATGCGCATCATCAAGCTGAAATATCACTGTGTTCAAGCCAAAGTGAAACTTCAGGTTCAGTTCCTACAGCTTCCTCACCCACTCTCATGAATCCGAGGATAGGTCCAACTTTTACGCTTGACTTGATCCAGTCAAGATTAGTTGACAATCACAATGCTCAAAAGTCACCATCTTCTATCCAGCAGTTTTTAGTTCAACAAATGGCTTCTTCTTTGACAAGAGATCCTAATTTTACAGCCGCACTTGCTACAGCCATTTCAGGAAGGTTTCTAGACCACACTACTTCTATGGAAAAAAGGTGA 882 0.4376 MEPTTCSVVDTSLNLNVAPSWDTVVDVSVLVEELERLNSENKRLTETLNHICDNYLTMQKHLAQLNSNSPDDFEKEAGIPSRKRKAENLFVYGSSGYTECSTITEEEDTIFKRPSTSPKVSKVLVRTEASDTSLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPSCPVKKKVQRSVEDPTILVTTYEGEHNHAHHQAEISLCSSQSETSGSVPTASSPTLMNPRIGPTFTLDLIQSRLVDNHNAQKSPSSIQQFLVQQMASSLTRDPNFTAALATAISGRFLDHTTSMEKR* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3935 293 SUPERFAMILY WRKY DNA-binding domain 133 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3935 293 SMART WRKY_cls 136 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3935 293 Gene3D WRKY domain 119 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja1g3935 293 ProSiteProfiles WRKY domain profile. 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3935 293 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 285 - -
Lja1g3935 293 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 285 IPR044810 GO:0003700
Lja1g3935 293 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja1g3935 293 Coils Coil 27 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3935 Lja-Chr1 49897113 49899359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3935 1 283 WRKY Transcription Factor Family AT1G80840 45.608 1.70e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja1g3935 WRKY 3.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3935 - - gmx:100127373 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2922 5 57495609 57497059 Lja1g3935 1 49897113 49899359 PCT