Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3929 ATGGCACAGTGTCACCGCAACCACGCCGCATCCAAAACCACCACCCACTTCCGCCTCTGGAATTCCCTCTCCGCCTCCTCCTTCCGCCGCATCATCTTCGACGCCGTCAGTTGCGGCGGAAGCTCCCGCCACCGCCACAACGGCGACGACCTCAGCACCGCCGCATCAACAGAGAGCTCAACCTCCGCTAAGCAACAACGGTTGGAGGAAGATGAGAGACCGACGGAGAAGCTATCCGATCTCCTTAACATAGCGGAGCGCGAAACCGAGGCTGATGCGAAGAAGAAGGAAGAGACATTGTCGGAGCTGAAGCAGGTAGTGAAGGAGCTGCGCGGAGAGGATCTGACGACGCGGCAAATCGCGGCGGCGAGAGTGAGGTTTCTGGCGAAGGAAGATTCCGAAGTGAGAGGATCCCTCGCAATGCTCGGAGCAATTCAACCACTCGTTGGAATGCTTGATTTGGAAGAAGACACTCATTCTCAGATCGCTTCTCTCTATGCGTTGCTCAATCTCGGGATCGGAAACGATGCAAACAAAGCAGCGATTGTCAAAGTTGGCGCTGTACACAAGATGCTGAAGCTCATTGAATCGAGGGAAGGTCCAGATTCATCGGTGTGTGAAGCCATTGTTGCGAATTTTCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGATCCTCTGGTGCAATACCTTTCCTAGTTAGAACACTTCAAAATCTGTATGATGAAAAAAGTAGCAGTAGCAGCTCCCATGTTAAGCAAGATGCTCTCAGAGCTTTGTTCAACCTAACAATCTTTCAGGCCAACGTTTCGTTTGTTTTGGAAACTGATCTCGTCGCGTTTCTGGTGAATGCGATAGGGGATATGGAAGTGAGTGAGAGAGTGCTATCGATTCTGGGCAATTTGGTGTCGAGTCCTGAGGGTAGAAAGTGTATCAGTGCTGTGAGGGATGCAATCCCAGTTCTGGTGGATGTGTTGCACTGGGTAGATTCACCAGGGTGTCAAGAGAAGGCGTCATACATTTTGATGATCATGGCTCATAAAGCTTATGGTGACAGGCAAACCATGATTGAGGCTGGGATCGCGTCGTCGCTGCTTGAGTTGACGCTTCTGGGTACCCCACTGGCACAGAAAAGGGCTTCAAGGATATTGGGTTGTTTGAGGATAGACAAAGGGAAACAGGTTTCTGGTGCAAATGTCTCCGCACCTATTTGTGCCTCTTCGTCGTCTTTCAATGGAGGCGGTAAAGAGGAGTGTTTGGTGGAGGAGGAAGATGGGGCGACGGGGATGAGCGAGGAAAAGAAAGCGGTGAATCAATTAGTCCAGCAGAGTTTGCAGAACAACATGATGAAAATTGTGAAGAGGGCTAACTTGCGTCAAGATTTCGTTCCATCCCAGCATTTCGCTGCACTCACTTCAACCTCCACTTCAAAGAGCCTGCCATTTTGA 1455 0.5031 MAQCHRNHAASKTTTHFRLWNSLSASSFRRIIFDAVSCGGSSRHRHNGDDLSTAASTESSTSAKQQRLEEDERPTEKLSDLLNIAERETEADAKKKEETLSELKQVVKELRGEDLTTRQIAAARVRFLAKEDSEVRGSLAMLGAIQPLVGMLDLEEDTHSQIASLYALLNLGIGNDANKAAIVKVGAVHKMLKLIESREGPDSSVCEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLQNLYDEKSSSSSSHVKQDALRALFNLTIFQANVSFVLETDLVAFLVNAIGDMEVSERVLSILGNLVSSPEGRKCISAVRDAIPVLVDVLHWVDSPGCQEKASYILMIMAHKAYGDRQTMIEAGIASSLLELTLLGTPLAQKRASRILGCLRIDKGKQVSGANVSAPICASSSSFNGGGKEECLVEEEDGATGMSEEKKAVNQLVQQSLQNNMMKIVKRANLRQDFVPSQHFAALTSTSTSKSLPF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3929 484 Gene3D - 247 408 IPR011989 -
Lja1g3929 484 Coils Coil 86 113 - -
Lja1g3929 484 Gene3D - 85 246 IPR011989 -
Lja1g3929 484 MobiDBLite consensus disorder prediction 39 75 - -
Lja1g3929 484 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 484 - -
Lja1g3929 484 SUPERFAMILY ARM repeat 102 392 IPR016024 -
Lja1g3929 484 SMART arm_5 132 173 IPR000225 GO:0005515
Lja1g3929 484 SMART arm_5 268 306 IPR000225 GO:0005515
Lja1g3929 484 SMART arm_5 175 218 IPR000225 GO:0005515
Lja1g3929 484 SMART arm_5 310 349 IPR000225 GO:0005515
Lja1g3929 484 SMART arm_5 219 267 IPR000225 GO:0005515
Lja1g3929 484 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3929 Lja-Chr1 49833918 49836548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3929 101 399 U-box Gene Family AT2G28830 33.654 4.66e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3929 - - lja:Lj1g3v1819880.1 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2888 5 56774456 56777516 Lja1g3929 1 49833918 49836548 PCT