Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3924 ATGAGTAGCTTGGTTGAGAGGCTTCGGGTAAGATCAGATCGCCGACCAGTTTACAATCTTGATGAGTCAGATGATGATGATCTTTTACCTAAAAAACCTGGAACAGTTCTGGAAAATATGGAGAGGATAGTCAGAAGTGATGCGAAAGAGGATTCATGTCAAGCCTGTGGAGAAAGTGGAAATCTTCTGAGCTGTGAAACTTGCACGTATGCTTATCATTCCAAGTGTTTACTTCCACCATTTAAAGGTCCTCTTCCAGACAACTGGAGGTGCCCTGAATGTGTTAGCCCACTTAATGATATTGATAAGTTACTTGATTGTGAGATGCGCCCTACTGTAGCTGATGACAGTGATGCCACAAAATTGGGGTCAAAACAAACTTTTGTTAAACAATACCTTGTTAAGTGGAAGGGGCTATCATATTTGCACTGCACATGGGTTCCAGAGAAAGAGTTTCTCAAAGCTTTTAAGAACCATCCTCGTCTAAAGACCAAAGTGAACAACTTCCATCGTCAAATGGCATCTGTCAATACTTCTGATGAAGACTTTGTTGCCATTCGTCCTGAATGGACTACAGTTGATCGGATAATTGCTAGCAGGGGTGGTGATGATGAAGAAAGGGAATATTTTGTGAAGTGGAAAGAGCTTCCATATGATGAATGCTATTGGGAATATGAGTCAGATATTTCTGCATTTCAGCCAGAAATAGAAAAATTCCATAGATTACGGTCTAGATCCAGCAAACTTTCTTCCGGTAAGCAAAAAAGCAATTTTAAGGATGATGGGGAGTTGACAAAACAGCAGAAAGAATTTCAACAGTATGAAAATAGCCCCGAGTTTCTTTCAGGAGGTACTCTGCATCCATATCAGCTTGAAGGGTTGAACTTCTTACGATTTTCTTGGTCCAAGCAAACTCATGTTATACTCGCTGATGAAATGGGACTTGGTAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTATAAAGAGGGTATCTCACCACATCTGGTGGTTGCTCCACTGTCAACATTGCGAAACTGGGAACGGGAATTTGCAACATGGGCCCCTCAAATGAATGTCGTTATGTATGTTGGGTCTGCCCAAGCCCGTACTGTTATAAGAGAGTACGAATTTTACTTTCCAAAAAAGCAGAAGAAGATCAAGAAAAAGAAATCTGGTCAAATAGTTAGTGAAAGCAAGCAAGATAGGATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATCAACCTTGACACAACATCGTTGAAACCGATAAAATGGGAATCCATGATAGTTGATGAAGGGCATCGTCTAAAAAATAAGGATTCAAAATTATTTTCTTCATTGACGCAATATTCTAGCAGGCATCGTGTGCTCTTGACTGGGACTCCACTTCAGAATAACTTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAATTTAAGGACATCAATCAAGAGGAACAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGAAGGAACTACCACCCAAAAAGGAACTTATCCTACGTGTTGAATTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACTCGCAATTATCAGTTATTAACTCGTCGTGGTGGTGCACAGATTTCTCTTATTAATGTTGTTATGGAACTGCGCAAGCTCTGTTGTCATCCTTTCATGTTAGAAGGAGTTGAACCAGATATTGACGATCCAAAAGAATTCCACAAACAGCTGCTGGAATCGTCAGGGAAATTGCAATTGCTGGACAAGATGATGGTAAAGCTTAAAGAGCAAGGGCATAGAGTCCTCATATATACCCAATTTCAGCACATGCTGGACTTGCTTGAAGATTACTGTTCTTACAAGAAATGGCTGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAATACGGATAGATCGTTTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTTTCTACTAGAGCTGGGGGATTGGGGATAAACCTCGCAACTGCTGACACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATTTACAAGCTATGGCCAGAGCTCATCGACTTGGACAGACTAACAAGGTGTTGATTTATAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATGGAGATGACTAAGAAGAAAATGGTGTTGGAACACCTTGTTGTAGGGAGGCTTAAGGCTCAAAATATTAATCAGGAAGAGTTGGATGACATCATAAGGTATGGCTCGAAGGAATTATTTGCAGAAGAGAATGATGAAGCAGTAAAATCTCGCCAGATCCATTATGATGCAGCAGCTATCGATAGGTTGCTGGATCGTGACCAAGTTGGAGATGAAGAAACTACTCTGGATGATGAAGATGAAAATGGATTTCTGAAGGCCTTTAAGGTTGCAAATTTTGAGTATGTTGATGAAGCTGAGGCTGCAGCAGAGGCAGCACAAAAGAAAGCCATGGAGACTGTAAACAACAGCTCAGATAGAACACATTTCTGGGAGGAGTTGTTAGGAGACAAATATCAAGAGCATAAAGTCGAGGAGTTTAATACCTTGGGGAAAGGGAAGCGGAACCGCAAGCTGATGGTTTCTGTTGAGGACGACGACCTTGCTGGTCTAGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTAGTGATGGTGAAACAAATTCTATTGGGGGCGGGGCTCCTATTGCTAGAAAGCCTTATAAAAAAAAAGCTCGTACAGCGGATAGCACAGAACCACTTCCTCTGATGGAAGGTGAAGGAAAAGCGTTCAGAGTACTAGGTTTTAATCAAAATCAGAGAGCTGCGTTTGTGCAAATTTTAATGAGGTTTGGAGTTGGTGATTTTGATTGGAAGGAGTTCACTTCCCGCATGAAACAGAAGACTTATGAAGAGATTAAAGATTACGGAACCCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCCTTACATTCACAGATGGTGTTCCAAAAGAAGGACTCCGAATTCAAGATGTGCTTGTTAGGATTGCAGTTCTTCTCTTGATAAGGGACAAAGTGAGGTTTGCATCAGAACATCCTCAAACTCCACTGTTTTCGGATGACATATTATCACGCTATTCAGGACTGAAGGGTGCAAAGATATGGAAGGAAGAGCATGATTTAGTTCTACTGCGTGCTGTGTTGAAACATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGATCTGAAGATTCAGGAGCTCATCTGTCAGGAGTTGAATCTTCCCACGATAAATTTGCCATTACCAGGACAAGTTGGCTCTCAGGCACAAAATGGTGCAAATTTGACAAGTGCAGAAGTACCTGCCAATCAATCCAGGGAAAATGGTGGGAGTGACATAACAGCTGATGGTGCACAGGGTTCGGGTGATGCTAAGAACCAACCACAGTTATATCAAGACTCTTCCATATTATATCATTTTAGAGACATGCAGAGAAGACAGGTTGAGTTTGTAAAAAAGAGGGTTCTTCTCTTGGAAAAAGGACTCAATGCTGAGTACCAGAAAGAATACTTTGGTGATCCAAAAGCAAATGAAGTAACAAATGAACAACTTAAAAGTGAACCCAAGGCTGCAAATTTTCCGAGTTATAAATCAAGGGACATGGATACCCAAATGATTGATCAACTGCCACAAGTAGAAAAAATAGCTTTAGAAGATATTTCAGGTGCTTGTGATAATGATCCAAATCGCATGGAATTAGTTCGACTTTACAATGAGATGTGCAAGGTAGTGCTGGAAAATCCCATGGATTTAGGTCAAACATCCTTGGCGAGACAATCAGTAGATGCCAATGCGGTGAAGAATTTCCAACCACTAGAAAGCATTTGTGAAGATATCAACAGAATTCTTGCACCCACAGAAGACCAGCCAATTGCAGAAACGCCATTATTGAATTCAGATAACAAACCAGTGACCATATCACCACCAGCCCCTCAAGGAGACTGCAAACCTGATTCTTCAGCAGACGGCGAGAGTAAGGATATGGTAGTAGAATCTGAACCTAAAAAAGAAAGCTGTTCAAGCCTGGTGGATGAGAAGAATGAAAATCCAAGTCTTCCGGAGAAAAAGGAAAGTGATACAGAAATGAAAGAGGGTTTTGATGCTGGATTCGTTGTAGTGGATGATTAG 4281 0.4062 MSSLVERLRVRSDRRPVYNLDESDDDDLLPKKPGTVLENMERIVRSDAKEDSCQACGESGNLLSCETCTYAYHSKCLLPPFKGPLPDNWRCPECVSPLNDIDKLLDCEMRPTVADDSDATKLGSKQTFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKNHPRLKTKVNNFHRQMASVNTSDEDFVAIRPEWTTVDRIIASRGGDDEEREYFVKWKELPYDECYWEYESDISAFQPEIEKFHRLRSRSSKLSSGKQKSNFKDDGELTKQQKEFQQYENSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYKEGISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARTVIREYEFYFPKKQKKIKKKKSGQIVSESKQDRIKFDVLLTSYEMINLDTTSLKPIKWESMIVDEGHRLKNKDSKLFSSLTQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQLLTRRGGAQISLINVVMELRKLCCHPFMLEGVEPDIDDPKEFHKQLLESSGKLQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCSYKKWLYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMEMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFAEENDEAVKSRQIHYDAAAIDRLLDRDQVGDEETTLDDEDENGFLKAFKVANFEYVDEAEAAAEAAQKKAMETVNNSSDRTHFWEELLGDKYQEHKVEEFNTLGKGKRNRKLMVSVEDDDLAGLEDVSSDGEDDNYEAELSDGETNSIGGGAPIARKPYKKKARTADSTEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSLTFTDGVPKEGLRIQDVLVRIAVLLLIRDKVRFASEHPQTPLFSDDILSRYSGLKGAKIWKEEHDLVLLRAVLKHGYGRWQAIVDDKDLKIQELICQELNLPTINLPLPGQVGSQAQNGANLTSAEVPANQSRENGGSDITADGAQGSGDAKNQPQLYQDSSILYHFRDMQRRQVEFVKKRVLLLEKGLNAEYQKEYFGDPKANEVTNEQLKSEPKAANFPSYKSRDMDTQMIDQLPQVEKIALEDISGACDNDPNRMELVRLYNEMCKVVLENPMDLGQTSLARQSVDANAVKNFQPLESICEDINRILAPTEDQPIAETPLLNSDNKPVTISPPAPQGDCKPDSSADGESKDMVVESEPKKESCSSLVDEKNENPSLPEKKESDTEMKEGFDAGFVVVDD* 1427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3924 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 521 781 IPR027417 -
Lja1g3924 1426 ProSitePatterns Zinc finger PHD-type signature. 53 94 IPR019786 -
Lja1g3924 1426 CDD CD2_tandem 189 240 - -
Lja1g3924 1426 Coils Coil 838 858 - -
Lja1g3924 1426 SMART DUF1087_2 842 905 IPR009463 -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 905 954 - -
Lja1g3924 1426 Gene3D - 529 753 IPR027417 -
Lja1g3924 1426 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 612 773 IPR001650 -
Lja1g3924 1426 CDD SF2_C_SNF 607 733 - -
Lja1g3924 1426 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 298 484 IPR014001 -
Lja1g3924 1426 Gene3D - 1039 1214 - -
Lja1g3924 1426 SMART PHD_3 52 95 IPR001965 -
Lja1g3924 1426 Pfam SNF2-related domain 306 585 IPR000330 GO:0005524|GO:0140658
Lja1g3924 1426 SMART ultradead3 282 495 IPR014001 -
Lja1g3924 1426 Pfam Helicase conserved C-terminal domain 609 722 IPR001650 -
Lja1g3924 1426 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1057 - -
Lja1g3924 1426 ProSiteProfiles Chromo and chromo shadow domain profile. 191 251 IPR000953 -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 1343 1426 - -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 1343 1357 - -
Lja1g3924 1426 CDD CD1_tandem 97 171 - -
Lja1g3924 1426 SUPERFAMILY Chromo domain-like 65 176 IPR016197 -
Lja1g3924 1426 Pfam CHD subfamily II, DUF1087 843 902 IPR009463 -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 905 922 - -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 1147 1179 - -
Lja1g3924 1426 Gene3D - 99 174 - -
Lja1g3924 1426 ProSiteProfiles Zinc finger PHD-type profile. 50 97 IPR019787 -
Lja1g3924 1426 Pfam Chromo (CHRromatin Organisation MOdifier) domain 123 157 IPR023780 -
Lja1g3924 1426 Pfam Chromo (CHRromatin Organisation MOdifier) domain 192 241 IPR023780 -
Lja1g3924 1426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 273 519 IPR027417 -
Lja1g3924 1426 ProSiteProfiles Chromo and chromo shadow domain profile. 99 181 IPR000953 -
Lja1g3924 1426 MobiDBLite consensus disorder prediction 1370 1426 - -
Lja1g3924 1426 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1057 - -
Lja1g3924 1426 Gene3D - 278 528 IPR038718 -
Lja1g3924 1426 SMART chromo_7 189 244 IPR000953 -
Lja1g3924 1426 SMART chromo_7 98 167 IPR000953 -
Lja1g3924 1426 SMART DUF1086_2 915 1072 IPR009462 GO:0003677|GO:0006338
Lja1g3924 1426 SUPERFAMILY Chromo domain-like 176 242 IPR016197 -
Lja1g3924 1426 Pfam PHD-finger 53 95 IPR019787 -
Lja1g3924 1426 Gene3D - 179 241 - -
Lja1g3924 1426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 98 IPR013083 -
Lja1g3924 1426 Pfam CHD subfamily II, SANT-like domain 937 1069 IPR009462 GO:0003677|GO:0006338
Lja1g3924 1426 SMART helicmild6 638 722 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3924 Lja-Chr1 49733496 49751715 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3924 598 773 RAD5 or RAD16-like Gene Family AT5G22750 31.818 2.47e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lja1g3924 SNF2_N 2.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3924 K11643 - gmx:100804203 2428.67