Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3922 ATGGAAGATCAGTTTCCCAAAGGAATGCGTGTTCTTGCCGTCGATGATGACCCTACTTGCCTCTTCGTTTTGGAAACCCTGCTCCGAAGATGTCAATATCACGTAACTACGACAAGTCAAGCAAAAACAGCATTGACGCTGTTGAGAGAAAACAAAGGCCAGTTTGACCTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTTCTTGAACTTGTTGGACTTGAAATGGACCTTCCTGTCATAATGCTTTCTGCAAATGGGGATACAAAGTTGGTGATGAAGGGGATTTCTCACGGGGCCTGCGATTATCTGCTGAAGCCTGTGAGAATGGAGGAGCTAAAGAACATTTGGCAGCATGTGATCAGGAGGAAGAAGTTTGATCCAAAGGAGAAGACCAAAACCAGCAACCTTGATAAACCAGCTTCTGATAGTGGAAAGTTGACTAAAAAGAGGAAGGATCAAGATGAAGGTGCAGATGAGGAGCAAGAGAATGATCATGACGCTGAGGATCCATCAAACCCGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACGGCAAGTTCGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTGCCTAAAAAGGTTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATTTACAGAAATATAGGCTTTATCTGAAAAGAATTAGCTCACTTAGCTGCATGGCAAGCCAACAGACTAGTATGATGGCGGCCTTAGGGAGTATTGATCGATCCTATTTGAAAATGGGCTCTATGAGTGGGGTTGGACATTTGCAACCAGTAAATGGTCTTGGACAGTTTCATAATAATGCTTTCAAATCCTTTTCACCTAGTGGAATAATTAGTAGATTGAACACTGCAGCTGGTCTGGATGTGCATGGATTTCAAACTTCCGGAGTACTTCAGTTGGGTCAATCACAATATCTAAACAATTTCAAAGATGATCAGCTTAATATCCAGCCAGCCACAGTTCCTGTTAATCCTAATCGTGTTCGAGGAATGTCAGTGACTATGGGGCTTGATCAATTGCAAGATAATATGGGTGTCATTCCTGTTCAAAACATGACCACTGATTTTGATAGGAGAACAACTACTTCACCCATTTCAAATAAACTCCCAGATCAAAGAGCAAGAATAACCACTTCTGTCTCTCACACACCACTTTTGGGTAGCTTAAACAATGCCTTGATGTTGGAAACTCACCCTCAAGATAAACCAGGTGGTATAGGATATGAAAATTCATCCTCTGCAGGAGCCTTCCAACATTCAGAAATTGCTTTCTCTTTGCTGGATAAAGGTAGATATACTGATAATTGGTCAAGCGACGTGAAGTCATCTGCGATCATGACAAATTCTTACCCTCCAAGTGAGTGTTTTAGACAAACAGCTACACCTCCTTCTATCGATAACATGGCTTCTTTACCCTTGCAAGGAGTGAATTTTACAAATAAGCCTGGGCAGACAAACAGTAACGTTCCATTTCAAGGGTGGGATGACCACAATCAGAATGCTACTTACTATTCAAATGTTATTGATGGATCAATAAGCTCTCCGACTACAGTTAATGAAGCTGTTGTTCCAGCAGGCCATACTCCTACTAACTCAACCATGCCCAAAACCTTGGACTACAATTTTTGTGATCCCTTGCAAATGAAGCGTGATGGCTTCGTGGAGTTAACTGAAGACACCCCGTTGAAGCAACATCAGGGGAATATCATGAACCAGCAGAAGCCTCAAGAAAGTTGCTTCTCTAATAATTTTGGTTCACTGGAAGACTTGGTCTATTCAATGATGGCACAGGAGCAACATAAGATGAAACTATTGGATGCGGACCTCATTTGTGATAATTACTGTGGTGGGATATCAATGTTACAGCAAGTTTGGGACAATATATCAGCATCATGCTATCCTCGCTGA 1965 0.4239 MEDQFPKGMRVLAVDDDPTCLFVLETLLRRCQYHVTTTSQAKTALTLLRENKGQFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDPKEKTKTSNLDKPASDSGKLTKKRKDQDEGADEEQENDHDAEDPSNPKKPRVVWSVELHGKFVAAVNQLGIDKAVPKKVLDLMNVEKLTRENVASHLQKYRLYLKRISSLSCMASQQTSMMAALGSIDRSYLKMGSMSGVGHLQPVNGLGQFHNNAFKSFSPSGIISRLNTAAGLDVHGFQTSGVLQLGQSQYLNNFKDDQLNIQPATVPVNPNRVRGMSVTMGLDQLQDNMGVIPVQNMTTDFDRRTTTSPISNKLPDQRARITTSVSHTPLLGSLNNALMLETHPQDKPGGIGYENSSSAGAFQHSEIAFSLLDKGRYTDNWSSDVKSSAIMTNSYPPSECFRQTATPPSIDNMASLPLQGVNFTNKPGQTNSNVPFQGWDDHNQNATYYSNVIDGSISSPTTVNEAVVPAGHTPTNSTMPKTLDYNFCDPLQMKRDGFVELTEDTPLKQHQGNIMNQQKPQESCFSNNFGSLEDLVYSMMAQEQHKMKLLDADLICDNYCGGISMLQQVWDNISASCYPR* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3922 654 CDD REC_typeB_ARR-like 11 125 - -
Lja1g3922 654 SUPERFAMILY CheY-like 7 133 IPR011006 -
Lja1g3922 654 Gene3D - 8 143 - -
Lja1g3922 654 MobiDBLite consensus disorder prediction 132 180 - -
Lja1g3922 654 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 236 IPR017930 -
Lja1g3922 654 SUPERFAMILY Homeodomain-like 178 237 IPR009057 -
Lja1g3922 654 Pfam Response regulator receiver domain 11 119 IPR001789 GO:0000160
Lja1g3922 654 ProSiteProfiles Response regulatory domain profile. 10 125 IPR001789 GO:0000160
Lja1g3922 654 MobiDBLite consensus disorder prediction 132 161 - -
Lja1g3922 654 Gene3D - 177 239 - -
Lja1g3922 654 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 2 614 - -
Lja1g3922 654 PIRSF RR_ARR_type-B 1 636 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lja1g3922 654 Pfam Myb-like DNA-binding domain 182 232 IPR001005 -
Lja1g3922 654 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 614 IPR045279 GO:0009736
Lja1g3922 654 SMART REC_2 9 121 IPR001789 GO:0000160
Lja1g3922 654 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 233 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3922 Lja-Chr1 49667198 49674235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3922 3 641 Response Regulator Gene Family AT2G25180 41.141 2.13e-123 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja1g3922 Response_reg 4.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3922 - K14491 gmx:100809002 879.011