Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3921 ATGGAAACACTGAGCCAGGAGCAGAACCAAACAGAAATTAAACAGCAACATGTTGAGGAAGTAGAAGAAGAAAATGAGGCAAAGAAAGAAACTTCATTGGATCTGAATGTTTCTGGCAATGATTCTGCTTTTGGGTGCAGTTCACAGCTCAATCTCAACACATGTTTGGACATGGATTTGTGTAAGGCTTCATCAGATAACCCTCCTGATGGTTCTGATGTAGCAGAGGCAAGAGTTTTTTCTTGCAACTATTGCCAGAGAAAATTTTACAATTCACAAGCACTTGGTGGGCACCAAAATGCTCACAAGTTAGGAACACAAACCATGATGATTCCTTTTCTTCATAATCAAATTCACCACAACATGAGTATGGAATCTCTACCTCTCCAATATGGTTCTTATTGTAGTAATAGACCACTAGGAATTCAGGCTCACTATATGATTCATAAACTTACTCATTTTTCATCCAATGGGTTTGGAAGAACTTTTGGACATCAACATCATGGTTTGGCAAGGCCCATTTTTCATCAACAACCTGGAATTGGGAAGCTAGCAATGGAAAGTTTCCACAAAACAGGATTATCATCACGAGGCAGTGCTGGTAGATTCCAAGTGATGCTCAATTCAACAACGAGTGAAGAAATCATTCGATACCCGGTTAGTGGAACTCGTTTGCAGACTAACCAAGAAGAGATGAAGCATCTTGACTTATCCCTAAGGTTGTGTTTGGATGGGGGAATATTTGAGGGGAATGTAATTTTAGAGGGTATTTCAAATCCCTTCAATTAA 789 0.3942 METLSQEQNQTEIKQQHVEEVEEENEAKKETSLDLNVSGNDSAFGCSSQLNLNTCLDMDLCKASSDNPPDGSDVAEARVFSCNYCQRKFYNSQALGGHQNAHKLGTQTMMIPFLHNQIHHNMSMESLPLQYGSYCSNRPLGIQAHYMIHKLTHFSSNGFGRTFGHQHHGLARPIFHQQPGIGKLAMESFHKTGLSSRGSAGRFQVMLNSTTSEEIIRYPVSGTRLQTNQEEMKHLDLSLRLCLDGGIFEGNVILEGISNPFN* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3921 262 MobiDBLite consensus disorder prediction 13 31 - -
Lja1g3921 262 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 8 241 IPR044246 GO:0009788
Lja1g3921 262 SUPERFAMILY beta-beta-alpha zinc fingers 77 103 IPR036236 -
Lja1g3921 262 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 8 241 - -
Lja1g3921 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 102 IPR013087 -
Lja1g3921 262 MobiDBLite consensus disorder prediction 1 32 - -
Lja1g3921 262 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Lja1g3921 262 Coils Coil 4 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3921 Lja-Chr1 49656845 49657666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3921 47 241 C2H2 Transcription Factor Family AT5G25160 35.945 3.29e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja1g3921 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3921 - - lja:Lj1g3v1821120.1 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2883 5 56691913 56693308 Lja1g3921 1 49656845 49657666 PCT