Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3917 ATGTTTGTGCTTGGCCACTTCATTTATCATTTTGTTACATATCTTTCGCTTGAGAATTGTTATCAAACACAATCTTTAGTGATGGCTTACACTGCTGGTCCTTTCAATCCATTGCGAAGTTTATTCATTGGGAAAGAAACCTGGAAAGTTAAGGTTCGCGTTCTTCGTGTGTGGGAGATGTTTCCTATTGGTGATCCATCCAAACCTTATGCCATTAATCTTGTCCTAATTGATGAAGAGGGAGTTAAAATTGAAGCTTATATTAAGAAGGGTTACATGTCGAAGTTTCGAGGTGAATTTGCTGAGGGAAATGTGTATAAGATAACCTATTTTGCTGTTGGTGACAATGGTGGTTCATTTCGTGCATGTGAACATGCGTTCAAGATATTTTTCACTTCAAGGACTCGTGCTGTGCCTGATTTTTCCGATGTCATTCCCACTGTTGGGTTGACATTGAAGAACTCTGCTGAGATTAAGGGTACTTTGGGGGAGTCTGATTTCCTGATAGATTATATTGGATTACTTGCAGAACTTCCAAGTGAGAGGCAGTATGAAAAATCTGGAAATATAACAAGGAAGATTGAGCTTGAGCTTATTGATGACAAGGGTAAGGTCAGGTGCGCCCTATTTGGGAACTATGTGGACATTGTGAAGGAATATTTGGCTAATGTTGGCAATAATTTACCAGTTGTTGTTGTCCAGTTGGCTAAAATTAAGTCATTTAGAGGTCATGTTGTAATTCAAAATGTCATGAATGGAACTAAGGTCTTGTTTAATCCTGATATCCCTGAAGTGACCTCTTTTCGGAATGGTTTGGCATTGCATGGAATTGAGTGTGATGTTCCTGTTGGTGAAATTCACGGTGGGCTGCCTTATGTGCGTGTTGATGAGGAGTTTCTTTCTCATTTTCCTAGGAAGACAATTCAAGAGTTGTATTCCACTGCAGAGGAGGGCATATTCATAGTATTGGCTACAATAAGTGATTTGCTTGATGGTGAGCGATGGTATTATACTTCGTGCCGCTGTCACAAATCATTAACTGTTGAGGGAGGTCTTTCTTACTGTCGTGGTTGTGCAATGTTTGTGCTTGAAGTTATTCCAAGGTTTATAATTAAGGCTGAGGTCTACGATGGTGAAGAAACTGCTACATTTGTGATGTTTGATAATGATAGTGAATCTATCATTCAAAAAAGTTGCAAAGATTTGGTTTTGGGCAGCAAGATTGATTCTATTGGTGAATACCCTGATGCTGTGAAGGCCATTGTTGGGCGCGAGTTCCTTTTCAAGGTTGAGAAAGGTTGTGATCATGGTGTGAAGTTTGATCATTCCTTTAAAGTAAAGAAGATCTGTGGTGATTGTGGTGTCATTGAAATGTTTAAGTCTAATGTTGCTGTTCATACTCCTAAGAAGTTGATGGCCGATGCATTTGTTTCCAATCTTGATTCTGGATCAAATGATTGTCCGTTGAGTGACAATATGGCTGATTATTCTGGTGAACTCTCAGAAATTGGGGCTATCGCTGTTTCGCTGGATGACATATCGCCGGTTGAATGCTCTTCTGTTCTTTCTTCTGCTGGGTGTGTTGTTGGTGGTGATTCAAGTGATGTGAAGCCTTCAAAGAGGATGAGGATAAGGAAGATCAAACTAGATCTTTAG 1656 0.3973 MFVLGHFIYHFVTYLSLENCYQTQSLVMAYTAGPFNPLRSLFIGKETWKVKVRVLRVWEMFPIGDPSKPYAINLVLIDEEGVKIEAYIKKGYMSKFRGEFAEGNVYKITYFAVGDNGGSFRACEHAFKIFFTSRTRAVPDFSDVIPTVGLTLKNSAEIKGTLGESDFLIDYIGLLAELPSERQYEKSGNITRKIELELIDDKGKVRCALFGNYVDIVKEYLANVGNNLPVVVVQLAKIKSFRGHVVIQNVMNGTKVLFNPDIPEVTSFRNGLALHGIECDVPVGEIHGGLPYVRVDEEFLSHFPRKTIQELYSTAEEGIFIVLATISDLLDGERWYYTSCRCHKSLTVEGGLSYCRGCAMFVLEVIPRFIIKAEVYDGEETATFVMFDNDSESIIQKSCKDLVLGSKIDSIGEYPDAVKAIVGREFLFKVEKGCDHGVKFDHSFKVKKICGDCGVIEMFKSNVAVHTPKKLMADAFVSNLDSGSNDCPLSDNMADYSGELSEIGAIAVSLDDISPVECSSVLSSAGCVVGGDSSDVKPSKRMRIRKIKLDL* 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3917 551 Gene3D - 300 439 IPR012340 -
Lja1g3917 551 CDD RPA1_DBD_A_like 49 136 - -
Lja1g3917 551 SUPERFAMILY Nucleic acid-binding proteins 34 139 IPR012340 -
Lja1g3917 551 Pfam Replication factor-A C terminal domain 320 431 IPR013955 -
Lja1g3917 551 PANTHER REPLICATION FACTOR A 1, RFA1 52 403 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g3917 551 CDD RPA1_DBD_B_like 170 269 - -
Lja1g3917 551 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 52 403 - -
Lja1g3917 551 Pfam Domain of unknown function DUF223 74 136 IPR003871 -
Lja1g3917 551 SUPERFAMILY Nucleic acid-binding proteins 303 430 IPR012340 -
Lja1g3917 551 CDD RPA1_DBD_C 306 430 IPR013955 -
Lja1g3917 551 Gene3D - 143 277 IPR012340 -
Lja1g3917 551 Gene3D - 34 138 IPR012340 -
Lja1g3917 551 SUPERFAMILY Nucleic acid-binding proteins 163 276 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3917 Lja-Chr1 49586656 49590207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3917 36 430 Core DNA Replication Machinery Family AT5G08020 23.971 7.97e-19 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3917 - - lja:Lj6g3v0884310.1 604.364