Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3916 ATGGCCAGACCACAACAGCGTTACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCTATATTGAAAACTAGGATATGGCTTGGGACATTTGAAACTGCTGAGGATGCAGCTAGAGCATACGATGAAGCCGCGAGGCTAATGTGCGGTGCGAGAGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCTTCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCTAAACTGCATAGATGCTACATGGCTTCTCTGCAAATGACAAGGCCTTCAATGCCAGAGCCTCAAAGAGCTGCAGATTCCCCAAATGTGGCCAACACAAGCAACATTCCCATGAAAAATGGTGAAATTGAAGAAATGTTGGCACATAAGAGGCCTAAGGAGGAACAAGAATCCGAGGGGAATTGGGTTTTGAAGAAGGTTAAGGCAGAGAGTGCTCACAACGCTATGTTTGAATATCCGATGACACCAATGCAGACAGATGTTAACACACAATTCAAGATAAAAAGTGAACGGAACTCTTATTATGGATCGGATGAAAGTCGGTTCACATTGCAGTTAAGGCCTCTTGAAGAAGATCATAATCATATAGAGCAAATGATAGAGGAGCTACTTCATTATGGTTCCATTGAGCTTTGTTCTTATCCAACACAGGCTCTGTGA 690 0.4478 MARPQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGARARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSMPEPQRAADSPNVANTSNIPMKNGEIEEMLAHKRPKEEQESEGNWVLKKVKAESAHNAMFEYPMTPMQTDVNTQFKIKSERNSYYGSDESRFTLQLRPLEEDHNHIEQMIEELLHYGSIELCSYPTQAL* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3916 229 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Lja1g3916 229 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Lja1g3916 229 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Lja1g3916 229 MobiDBLite consensus disorder prediction 99 119 - -
Lja1g3916 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 154 - -
Lja1g3916 229 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Lja1g3916 229 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 178 224 - -
Lja1g3916 229 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Lja1g3916 229 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Lja1g3916 229 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Lja1g3916 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 1 154 - -
Lja1g3916 229 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE 178 224 - -
Lja1g3916 229 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3916 Lja-Chr1 49578610 49579810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3916 1 94 AP2-EREBP Transcription Factor Family AT5G25190 92.553 1.04e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g3916 AP2 8.3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3916 - - gmx:100819158 262.307