Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3915 ATGAAAATGAAGCTTCTTCTTATGCTTCTGATGCTTCCTCCCATTCTCCACCAACCCATTTCGGTTCACGTCGCTGCCGCAGACCCTCTTGTTTCCTCCGCACAAGTTCCACTTTCCTCAGTTATTCAGGTGGAGGAGCACCACCACCAAAAAAAACTGAATAAGAATGTTGTAATAATCCTCGTAGCCAGCACTGCACTTGGTACTGTCATTTTGAGCTCGTTATGCTTCTGGATTTATCATAGGAAGTATCGAACAAAATCCACTAGGAACAATGTTCAAACCCCGGAGAAGGGGCTAACATTAGCACCAATTTTGAGTAAATTCAGTTCTGTCAAGCTGGTTGGTACTATGAAGGGTTCTGTTCCAGTAATAGATTATGAGCAAATAGAGAAAACCACCAATAATTTTAATGAAAGTAACATCTTGGGCGAGGGCGGTTTCGGCCGCGTTTACAAGGCTCGATTGGATGATAAATTGGATGTTGCTGTCAAGAAGCTACACTGCGAAAATCAGAATGCTGAAAGAGAATTTGAGAATGAGGTGGATTTGTTAAGAAAAATTCAGCATCCAAACATAGTTTCTTTACTAGGTTGTTGCATTAATGGCGATACGAGGTTTATTGTGTGTGAGTTGATGCAAAATGGATCCTTGGAAGCTCAGTTACATGGACCATCTCATGGTTCAGCATTGAATTGGCATATGAGGATGAAGATTGCTCTAGATACAGCAAGAGGATTAGAATATCTGCACGAGCACTGTTACCCTGCAGTAATACATAGAGACATGAAATCTTCTAATATTCTTTTAGATGCAAAGTTCAATGCCAAGCTTTCTGATTTTGGCCTTGCCATAACTGATGGGTCCCAAAACAAGAACATGAAGCTTTCTGGCACCTTGGGCTACGTAGCACCTGAATATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTCTATGCTTTTGGGATTGTTCTCCTGGAACTCTTATTAGGAAGGATGCCTGTGGAAAAACTAGCACCATCTCAGTGCCAATCCATTGTCACATGGGCCATGCCGCAACTCACAGATAGGTCCAAGCTCCCAAACATTGTTGATCCAGTGATTAAGAATACAATGGATCTCAAGCACTTATACCAGGCTTCTGCGGTAGCAGTGCTGTGCGTGCAACCAGAGCCCAGTTACCGCCCTTTGATAAAAGATGTTCTGCACTCGCTTATCCCTCTTGTTCCCATGGAGCTTGGAGGAACACTGAGAGTTTCACAAGTGACACTACATGGCTCTCTTGATGATCCACCTCTGACTCCAGTCATTGATTGA 1320 0.4265 MKMKLLLMLLMLPPILHQPISVHVAAADPLVSSAQVPLSSVIQVEEHHHQKKLNKNVVIILVASTALGTVILSSLCFWIYHRKYRTKSTRNNVQTPEKGLTLAPILSKFSSVKLVGTMKGSVPVIDYEQIEKTTNNFNESNILGEGGFGRVYKARLDDKLDVAVKKLHCENQNAEREFENEVDLLRKIQHPNIVSLLGCCINGDTRFIVCELMQNGSLEAQLHGPSHGSALNWHMRMKIALDTARGLEYLHEHCYPAVIHRDMKSSNILLDAKFNAKLSDFGLAITDGSQNKNMKLSGTLGYVAPEYLLDGKLTDKSDVYAFGIVLLELLLGRMPVEKLAPSQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDLKHLYQASAVAVLCVQPEPSYRPLIKDVLHSLIPLVPMELGGTLRVSQVTLHGSLDDPPLTPVID* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3915 439 Gene3D Transferase(Phosphotransferase) domain 1 213 412 - -
Lja1g3915 439 Gene3D Phosphorylase Kinase; domain 1 104 212 - -
Lja1g3915 439 PANTHER BNAA04G14780D PROTEIN 31 424 - -
Lja1g3915 439 PANTHER OS01G0750732 PROTEIN 31 424 - -
Lja1g3915 439 Pfam Protein kinase domain 138 404 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3915 439 Coils Coil 164 184 - -
Lja1g3915 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Lja1g3915 439 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Lja1g3915 439 ProSiteProfiles Protein kinase domain profile. 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3915 439 SUPERFAMILY Protein kinase-like (PK-like) 114 406 IPR011009 -
Lja1g3915 439 CDD STKc_IRAK 143 409 - -
Lja1g3915 439 SMART serkin_6 137 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3915 Lja-Chr1 49569188 49572406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3915 22 352 Receptor kinase-like Gene Family AT1G80640 47.813 3.07e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Lja1g3915 Pkinase 4.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3915 - - lja:Lj1g3v1841230.1 651.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2877 5 56592184 56596728 Lja1g3915 1 49569188 49572406 PCT