Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3913 ATGGCGTACAACCACCACCACCACCTCTCTCAAGACCTCCCAATTCACCATTTCTCAGACCAACAACAACAGGACCACCATAACCACCACCCTCTATTGGATGACCCCACCACCAAACCTAACTCCTCCGATCCTCACCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTCCGCCCTCACTACACCACCACCACCACCACCACCACCAACGCCAACACGAACTTCCTCAACCTCCAAACCGCCAATTCCGACTCCACCGCCGCCCAATCCTCCTCCCAGTGGCTCGCCCGCCCTGTTCTACACGGCAAGGTTATCGACGGCGGCGCTGATATGTCTCACGACTCTACCGGCGGCGAGAAGACCGAGCCGGTGACTGAGGGCGGAGCTGACGGTGGTTTGATGAGCTGGCAGAATGCTAAGTGCAAGGCGGAGATTCTGTCGCACCCGCTGTACGAACAGCTGCTTTCTGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCCAGGATCGACGCTCAGCTGGCGCAGTCGCAGAATGTGGTGGCCAAGTACTCCGCCTTTGGACACGGCTCTCAGGGTATGCTTGGCGAGGATAAGGAACTCGATCACTTCCTGTCACACTATGTTTTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATTGAGCAGTCTTTACAAAGTCTGACAGGAGTTTCACCTGGGGAAGGTACAGGAGCAACAATGTCTGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGACGGTCATGACAATATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGGTCCCTCATGGAGCGTGTGAGACAGGAACTAAAGCATGAATTGAAACATGGTTATAAATCGAAAATTGTGGACATAAGAGAGGAAATCATGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCCTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACGGGTTTGCAGTTGAAGCAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATGCTTCAACTTCTACTGCGTTGAAGAGCAAGCGCAAAAGGTCATAA 1221 0.5225 MAYNHHHHLSQDLPIHHFSDQQQQDHHNHHPLLDDPTTKPNSSDPHQTAPNWLNNALLRPHYTTTTTTTTNANTNFLNLQTANSDSTAAQSSSQWLARPVLHGKVIDGGADMSHDSTGGEKTEPVTEGGADGGLMSWQNAKCKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGSQGMLGEDKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGHDNMGFGPLVPTENERSLMERVRQELKHELKHGYKSKIVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASTSTALKSKRKRS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3913 406 ProSiteProfiles ELK domain profile. 308 328 IPR005539 GO:0003677
Lja1g3913 406 SMART HOX_1 330 395 IPR001356 GO:0003677
Lja1g3913 406 Pfam Homeobox KN domain 348 387 IPR008422 GO:0003677|GO:0006355
Lja1g3913 406 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 37 405 - -
Lja1g3913 406 MobiDBLite consensus disorder prediction 35 55 - -
Lja1g3913 406 MobiDBLite consensus disorder prediction 20 34 - -
Lja1g3913 406 Pfam ELK domain 308 329 IPR005539 GO:0003677
Lja1g3913 406 Pfam KNOX1 domain 143 183 IPR005540 GO:0003677|GO:0005634
Lja1g3913 406 Gene3D - 329 390 - -
Lja1g3913 406 SMART KNOX2_2 196 251 IPR005541 GO:0003677|GO:0005634
Lja1g3913 406 CDD homeodomain 331 392 IPR001356 GO:0003677
Lja1g3913 406 ProSiteProfiles 'Homeobox' domain profile. 328 391 IPR001356 GO:0003677
Lja1g3913 406 SMART KNOX1_2 140 184 IPR005540 GO:0003677|GO:0005634
Lja1g3913 406 SUPERFAMILY Homeodomain-like 330 393 IPR009057 -
Lja1g3913 406 Pfam KNOX2 domain 200 250 IPR005541 GO:0003677|GO:0005634
Lja1g3913 406 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 37 405 - -
Lja1g3913 406 SMART ELK_2 308 329 IPR005539 GO:0003677
Lja1g3913 406 MobiDBLite consensus disorder prediction 20 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3913 Lja-Chr1 49459946 49464140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3913 1 405 Homeobox Transcription Factor Family AT5G25220 66.514 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lja1g3913 KNOX2 6.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3913 - - gmx:100790048 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3913 1 49459946 49464140 Lja1g3913 1 49459946 49464140 ECH