Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3895 ATGGCGGTTGGTGACCACAGTGATGGTGGAAGCAAAAAGAGGTCCGCTACTGAATCAAGTTCTGAGAATAAGAGAAAGAAAGTGTTTCACTGGACAGAAGATGAACACAAGCTCTTTCTTCTCGGACTTCAAGAATGTGGCAAAGGGGCTTGGAGAAATATCGCTCGGAAGTTTGTGGTGACAAAGACTCCTACCCAAGTAGCAAGTCATGCTCAAAAGTACTACATCAGGCAAAAGCTTTCTGAAGGAGGGAAAGATGATAACAAAAAGAGATCTAGTATCCATGATATCACACTTCTTGATATTATGGAAAATACCACACGAATTAATGACAAGTCTCTTCCATTAATTCAAGAGTCTCAAATAATGTCTTCACCGCCGCAACAGATGAAGGAGACTAGCATCCAAAATGTGCAACTTGACTCGATTGATGTTGGTCACAACAATAATCCACTCATGATTTTCAATCCAAGCAATGACTATGAAGTTGGAGGGGCACAACAGATCCAAAATGTGCAACCTGGATGGATTAGTTGTGACCACAACAATGATCAACTCATGGGTTTCAATCCAAACAACGATGGAATGTCCATGTTGTCTTCCCAAGACTATGCAGTTACAGGCGCAGAAGATCTATACGACATTCTTTCTCATTTTATTTGTGCCAAGCGACAATCTTCGGGTTTCAAGATGTCTTCTTCCTAG 705 0.4128 MAVGDHSDGGSKKRSATESSSENKRKKVFHWTEDEHKLFLLGLQECGKGAWRNIARKFVVTKTPTQVASHAQKYYIRQKLSEGGKDDNKKRSSIHDITLLDIMENTTRINDKSLPLIQESQIMSSPPQQMKETSIQNVQLDSIDVGHNNNPLMIFNPSNDYEVGGAQQIQNVQPGWISCDHNNDQLMGFNPNNDGMSMLSSQDYAVTGAEDLYDILSHFICAKRQSSGFKMSSS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3895 234 Pfam Myb-like DNA-binding domain 31 74 IPR001005 -
Lja1g3895 234 ProSiteProfiles SANT domain profile. 31 79 IPR017884 -
Lja1g3895 234 Gene3D - 29 80 - -
Lja1g3895 234 CDD SANT 31 74 IPR001005 -
Lja1g3895 234 SUPERFAMILY Homeodomain-like 24 79 IPR009057 -
Lja1g3895 234 MobiDBLite consensus disorder prediction 1 26 - -
Lja1g3895 234 SMART sant 27 77 IPR001005 -
Lja1g3895 234 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 26 78 IPR006447 GO:0003677
Lja1g3895 234 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 161 IPR043363 -
Lja1g3895 234 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Lja1g3895 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 79 IPR017930 -
Lja1g3895 234 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 7 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3895 Lja-Chr1 49147113 49148310 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja1g3895 Myb_DNA-binding 7.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3895 - - gmx:778039 153.295