Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3887 ATGGAGCTTCAGTTAGCTCTGGCTCTCCCTACCCAAAATTCCTTTGAGGGGTTTAATCCTAACAAGCCTGGCTTAATGAAATCAAAACAGATAGTGAGTTCAGAATTATGCAGGACCAGTTGTTGTTCTGAAAGCAAAAAGCATGTTAGAAACAAGCGTAGCTTCCAAGAGTCGTTTGGACATTGTGTGAAACCTTTGCCTTTACTAGTATGGAGTGGACAGCCAAATGAGGAAGATGACAATAGAAAAAAGAGGCACAGAGCATCAAACAAGAATGAAGAAGAAAACCATTTGGTGGGGTGGCCACCGATTAAATCATGGAGAAAGAAAGAACTTCATCCTCAGCATCCTGTAAGAGGCCAGATAAGGAATGAAAGGATGCAAGCTAATGAGAATCGAAGTAGAGGAACAAACTCTTCATATGTCAAAGTTAACATGGAAGGGGTACCAATAGGGAGGCTAATCAATTTGAGACTTTACAACTCCTATCAAACACTTACAGATGCATTGATTAGCATGTTTGTTGGATACCAAACGTTTGAGGAAAATGGAGCAGGTTACACGCTCACCTTTCAAAATAAGCAAGGGGAATGGCTTCTTCCTAGACATGTTCCTTGGCAAACCTTCATTGGTACGGTGCGGCGTTTGGCGATATTGAGGAATGGAAATGAAAATATTTGA 681 0.4112 MELQLALALPTQNSFEGFNPNKPGLMKSKQIVSSELCRTSCCSESKKHVRNKRSFQESFGHCVKPLPLLVWSGQPNEEDDNRKKRHRASNKNEEENHLVGWPPIKSWRKKELHPQHPVRGQIRNERMQANENRSRGTNSSYVKVNMEGVPIGRLINLRLYNSYQTLTDALISMFVGYQTFEENGAGYTLTFQNKQGEWLLPRHVPWQTFIGTVRRLAILRNGNENI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3887 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 222 - -
Lja1g3887 226 MobiDBLite consensus disorder prediction 73 96 - -
Lja1g3887 226 Gene3D - 134 226 - -
Lja1g3887 226 ProSiteProfiles PB1 domain profile. 139 226 IPR000270 GO:0005515
Lja1g3887 226 Coils Coil 76 96 - -
Lja1g3887 226 MobiDBLite consensus disorder prediction 76 94 - -
Lja1g3887 226 SUPERFAMILY CAD & PB1 domains 133 217 - -
Lja1g3887 226 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 222 IPR003311 GO:0005634|GO:0006355
Lja1g3887 226 Pfam AUX/IAA family 3 222 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3887 Lja-Chr1 49018559 49020038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3887 130 218 B3 DNA Binding Superfamily AT3G61830 28.889 9.41e-08 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lja1g3887 AUX_IAA 1.4e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3887 K14484 - gmx:100802759 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3887 1 49018559 49020038 Lja1g3887 1 49018559 49020038 ECH