Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3882 ATGGGAAACAGTTGGTTTTTATCCCATGTTGTTGCTACCACCATGATGTTCTGTTTCTGCATCTTCCTTCTCTGCAAACCCTGTTTGTGTGGTGTTCAATACTTTGGCAAGATCTCACCGGGCCTTGAAGGTGCTCAGATGAACTGGATTGACAAGGATGGCAAGTTCCTCTTATCAAACAATGAGGATTTCGCTTTCGGCTTCGTCACCACCGCCAATGATACCACCGCTTTTCTTCTCGTGGTGGTCCATGTAGCCAGCTCCACCGTGATTTGGACCGCGAACAGAGGGTTACCCGTTTCAGGTTCTGACAAATTCTTCTTCGATGATGGAGGTAATGCCTTTTTGCGTGGGAAAACCAGTGTGGTGTGGTCTACAAACACAGGTGGAAAAGGGGTTTCTTCAATGGAATTGCAGGATACTGGAAATCTGGTTTTGCTTGGGAAAGACAATAGGACAATTGTTTGGCAGAGTTTTAGCCACCCAACTGATACTTTGTTGCCAGGACAGGATTTCACAGAGGGAATGAAGCTCATAAGTGAACCTAGTCCTAACAATTTGACCTTTGTTCTTGAGATAAAATCTGGAAGTGTTGTTCTTTCAGCTGGGTTTGATAAAACTCCTCAGCCTTATTGGACTATGCAGAAGGATAACAGGAAAACCATTAACATAGATCGTGATGTGGTGGCTTCTTCAAACATCAGTGACAATTCATGGAGATTCTATGATAAAGGGAAATCTTTGTTGTGGCAATTCATTTTCAGTGCTGATGTGGGTCTAAATGCTACTTGGGCTGCTGTTTTGGGAAATGATGGTGTTATTACTTTCTCTAATCTCAACAGTGGAGGTTCCAATGGGGATTCTACAACAAAGATACCACAAGATCCTTGTGACACACCAGAGCCTTGTGATCCATATAGCATTTGCTCTGGCTCAGGGAAGAACAGGTGTGGTTGCCCTTCTGTTGTTCCTAATTGCAAACCTGGTTTTGTATCTACTTGTGGTGGTGGTGTGAAGGAAAACTCTGTTCAGTTAATGAAAGGTGATGATGGACTCGGTTATTTCGCGCTTGATTTCATTCAGCCCTTCTCGAGAACCGATCTGGCTGGTTGCCAATCTGCTTGCCATGGAAATTGCGCGTGCCTTGCCATGTTCTTCCACAAGAGTTCAGGGAAGTGTTTTCTGTTGGATAGCATTGGAAGCTTTCAGAAGCCTGATGAGGATCCCGGTTATGTTTCTTACATCAAGGTCTCGAGTGATGGAGGCGTGGGCGCTGGCTCAGGGGGCGGGGGAAGCAGCAGTAAACACACTGCAGTTATTGTGGTCATTGTGATAATAACATTGATTATCATTTCTGGCATGCTCTTTGTGGGAGTTAGATACTACAGAAGAAAGCAAAAATTGCCTGAGTCTCCTAAGGATAACTCAGAAGAGGACAATTTCTTGGAGAATTTAACTGGTATGCCAATCCGGTTTAGCTACAAAGACCTTGAAGAGGCAACTAATCACTTCTCTGTGAAGCTTGGTCAAGGAGGTTTTGGGTCAGTTTACAAGGGAGTTTTATCAGATGGGACTCAAATAGCTGTGAAGCAGCTTGAAGGTATTGGACAAGGGAAGAAAGAGTTCAGGGCTGAAGTCAGCATCATTGGCAGCATTCACCACCTTCATTTGGTCAAGCTCAGAGGATTCTGTGCTGAAGGAGCTCATAGGCTTCTTGCTTATGAGTACATGGCAAATGGATCTTTAGATAAATGGATATTCAATAAGAACAAAGGTGAGTTTCTGTTGGATTGGGATACCAGGTTCAGTATAGCCGTGGGAACAGCAAAAGGGCTTGCATATTTGCATGAAGACTGTGACTCTAAGATCATTCACTGTGACATCAAGCCAGAAAATGTGCTTCTGGATGATCATTTCATGGCTAAAGTTTCAGATTTTGGCCTCGCGAAGCTAATGAACCGAGAACAAAGCCATGTTTTCACAACACTGAGAGGCACTCGGGGCTACCTTGCCCCGGAGTGGATAACAAACTATGCTATATCAGAGAAAAGTGATGTGTACAGCTATGGGATGGTGCTGCTAGAGATCATTGGCGGGAGGAAAAACTATGATCCTAAAGAGACTTCAGAGAAATCCCATTTCCCAACTTTTGCTTACAAGATGATGGAAGAAGGGAAGCTGAGGGATATTTTTGATTCAGGGTTGGAAATTGATGAGAATGATGACAGGTTTCAATGTGCTATCAAAGTTGCATTGTGGTGCATACAAGAAGACATGTCACTGAGGCCTTCCATGACCAGAGTTGTCCAAATGCTGGAGGGTCTTTGCATTGTTCCTCAGCCACCAACTAGTTCTGCTTTGGGTTCTCGCCTATTCTCAACTGTATTCCGATTGTCCAGTGAAGGCGCCACCTCTTCCGGCCCATCAGACTGTAATAGTGATGCCTATCTCTCCGCTGTTCGCCTTTCCGGGCCAAGATAA 2481 0.445 MGNSWFLSHVVATTMMFCFCIFLLCKPCLCGVQYFGKISPGLEGAQMNWIDKDGKFLLSNNEDFAFGFVTTANDTTAFLLVVVHVASSTVIWTANRGLPVSGSDKFFFDDGGNAFLRGKTSVVWSTNTGGKGVSSMELQDTGNLVLLGKDNRTIVWQSFSHPTDTLLPGQDFTEGMKLISEPSPNNLTFVLEIKSGSVVLSAGFDKTPQPYWTMQKDNRKTINIDRDVVASSNISDNSWRFYDKGKSLLWQFIFSADVGLNATWAAVLGNDGVITFSNLNSGGSNGDSTTKIPQDPCDTPEPCDPYSICSGSGKNRCGCPSVVPNCKPGFVSTCGGGVKENSVQLMKGDDGLGYFALDFIQPFSRTDLAGCQSACHGNCACLAMFFHKSSGKCFLLDSIGSFQKPDEDPGYVSYIKVSSDGGVGAGSGGGGSSSKHTAVIVVIVIITLIIISGMLFVGVRYYRRKQKLPESPKDNSEEDNFLENLTGMPIRFSYKDLEEATNHFSVKLGQGGFGSVYKGVLSDGTQIAVKQLEGIGQGKKEFRAEVSIIGSIHHLHLVKLRGFCAEGAHRLLAYEYMANGSLDKWIFNKNKGEFLLDWDTRFSIAVGTAKGLAYLHEDCDSKIIHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPKETSEKSHFPTFAYKMMEEGKLRDIFDSGLEIDENDDRFQCAIKVALWCIQEDMSLRPSMTRVVQMLEGLCIVPQPPTSSALGSRLFSTVFRLSSEGATSSGPSDCNSDAYLSAVRLSGPR* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3882 826 CDD STKc_IRAK 508 775 - -
Lja1g3882 826 ProSiteProfiles Protein kinase domain profile. 502 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3882 826 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 214 IPR036426 -
Lja1g3882 826 Pfam D-mannose binding lectin 89 172 IPR001480 -
Lja1g3882 826 CDD PAN_AP_plant 358 417 - -
Lja1g3882 826 Gene3D Phosphorylase Kinase; domain 1 467 576 - -
Lja1g3882 826 CDD B_lectin 50 162 IPR001480 -
Lja1g3882 826 ProSitePatterns Protein kinases ATP-binding region signature. 508 530 IPR017441 GO:0005524
Lja1g3882 826 PIRSF SRK 8 821 IPR024171 GO:0004674
Lja1g3882 826 SMART blect_4 48 162 IPR001480 -
Lja1g3882 826 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 826 - -
Lja1g3882 826 ProSiteProfiles Bulb-type lectin domain profile. 42 159 IPR001480 -
Lja1g3882 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Lja1g3882 826 SUPERFAMILY Protein kinase-like (PK-like) 482 773 IPR011009 -
Lja1g3882 826 Gene3D Transferase(Phosphotransferase) domain 1 577 778 - -
Lja1g3882 826 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 14 826 - -
Lja1g3882 826 SMART serkin_6 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3882 826 Pfam Protein kinase domain 505 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3882 826 Gene3D - 48 161 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3882 Lja-Chr1 48961089 48964212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3882 449 784 Receptor kinase-like Gene Family AT5G20050 46.089 5.11e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Lja1g3882 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3882 - - gmx:100791158 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3882 1 48961089 48964212 Lja1g3882 1 48961089 48964212 ECH