Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3877 ATGCCTCAGCTGCTACATGGGAAGCTTAAGGTAACCATATTTGAAGTTGATAGGCTGCAAGCTGGATGTAATTTGGAATTCTTGCGGAAGGGCACAACACAAAAGGGGAAGAGACTTCTAGCCCAAGTTAAGGGTTGTCTGCTGTGCCGACCTGAGATTGTTGGTACAAGACTATATGCAACAGTGGATTTAGACAAAGCAAGGGTTAGAAGGACCAGAATGATAGGAAACCAACCCTCCAACCCCAAGTGGAAGGAGAGCTTTGAAATATATTGTGCTCATCATATCTCAAACATTATATTCACTGTAAAAGATGATAATCCAATTGGAGCAACTCTAATTGGAAGAGCTTACATCCCTGTTGAGCAAGTCATCAAGACCCCTATAATTAACAGATGGGTTGAGATACTAGATGAAGAAGATCATCGCCCTGTCCCTGGTGGCTCCAAAATTCGTGTCAGTGTGCAATTCTCTAGTGTCACCGAGGACAATGCATGTCTATGGTCCCAAGGAATACATGTGCCATTTTCAGGTGTTCCTCGTACATTTTTCAACCAAAGACAAGGTTGCAGTCTCACTTTGTACCAAGATGCCCATGTCCCTGATGGTTCCACCCCATGGATTCCTATATCAGGAACAAAATATTACGTGCCTGCAAGATGTTGGGAGGACATTTACAGTGCAATCATGGATGCTAAGCACTTTATTTACATAGCAGGGTGGTCAGTTTACACTGAAATAAACTTGGTTAGAGACCCAAAGAATTTAGGTTCAGAAAGCGTCATCACCCTTGGGGAACTTCTCAAAATGAAAGCTGATGGTGGTGTTAATGTTCTCATGCTTGTTTGGGATGACAGAACCTCTGTTCCAGATTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAGGAAACTGCACAGTACTTTAGGAACACAAAGGTTCATTGTGTGTTGTGCCCACGTAACCCAGATAATGGAAGAAGCATTGTTCAAGGTCTTCAAATCTCAACAATGTTCACTCATCACCAAAAGACTATAGTTCTTGACAGTCAAGTTACAGGATTAGAGAAGCGAAGTGTGACAAGTTTTATAGGTGGACTTGATCTTTGTGATGGGAGATATGATACCCGTGAACATCCTTTGTTCTCAACTCTGAACACAGTCCATCATGCTGATTTCCATCAACCAAATTTCCCAGGAGCTTCCATTAAGAAAGGTGGTCCAAGAGAGCCATGGCATGACATTCATTGCAAGCTGGAAGGGCCTATTGCATGGGATGTGTTGTTCAATTTTGAGCAAAGGTGGGAAAAGCAAGTGGGGAAGCAATTCTTGATGTCAATTGATGAGCTTGATCGATTTCTGGTGCATCCATCTGATGCAATGGTATCAGAAGAGGATAAGGACACATGGAGTGTTCAGTTGTTCAGATCCATTGATGGGGGTGCTGTTTCTAGCTTCCCCCAAGCCCCAGATGAAGTTGCTGAATTCGGCCTCATTAGTGGCAAGGATAATGTCATTGACAGAAGCATTCAGGATGCATACATAAATGCTATTCGACGAGCAAAGAAATTCATCTACATTGAAAATCAATATTTCCTAGGGAGTTCATATGGTTGGAAAAGTTCTGATATCAAAGTTGAGGATATCAATGCTTTGCATCTGATACCAAAGGAGTTGTCATTGAAGATTGTGAGCAAGATTGAAGCAGGGGAAAGGTTTGTTGTGTATGTAGTGATCCCAATGTGGCCAGAAGGTATGCCTGAAAGTGCTTCAGTTCAGGCAATACTAGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGATGCCATCAAGAAGAAGAATATTGAAGCACACCCCAGAGATTATTTGACATTCTTTTGCCTTGGCAAGAGGGAGAGTAAGATAGAAGGAGAATACACTCCTCCAGAGGAACCAGAGCCTGACAGTGACTACCGAAGAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATCATCATCGGTTCCGCCAACATCAACCAAAGATCAATGGATGGTGGAAGAGATACAGAGATAGCAATGGGAGCATTCCAACCGCATCATCTAGCATCAAACGGTCCACAAAGGCCACAAGGCCAGATTTACGGGTTTCGGCGAGCATTGTGGTACGAGCATATTGGGTATGCTCACGATGTGTTCGACGAGCCTGAGAGTGAGGAATGTGTGAAACTAGTGAATCGCATTGCTGAGACGAATTGGGAATTATACACGAAGGACACGGTTGATGAAAGTGTAGCATCAGTTCACATTTTACGATATCCTAATAACATAATGTCACATTTGCTTCATGGGAGGCTCGATGTTATTATATATGAGGTCGATACATTACAAACTCTTAATCGGTGCATGTTCAATATCTGCAACAAGGGTCCAAGTTCCGGCACGGGGAAGAAATTTTTATCCCAACTGAAAAGTTGTTTGCTATGCCAATACCACTGCCAACCTGAGATTACTGGAATAGGTCTCTATGCAACAGTTGATTTGGATAAAGCAAGAGTTGCAAGGACTAGAGTAATAACAAATCAAACCTCCAGCCCCAAATGGAATGAGACCTTTCACATATACTCTGCCCATTCAATTTCCAACATCATATTCACTGTCAAACAAGCCAACCCTGTGAGTGCAACTCTAATTGGCAGAGCCTATGTCCCTGTTGATCAACTTCTGCAGGGGAACATAGTGGATAAATGGGTTAAGATTCTAGATGTGAATCATAATCCCCTCCAAGGTGGCCCTGAAATCCATGTCAGAATACAGTTTTTTGATGTAAAAAATGATGCAAACTGGTCTCAAGGACTAAGAACACCACAATTTCAAGGAGTTCCCCACACTTTCTTCAATCAAAAACAGGGTTGCAGAGTTACCCTGTACCATGATGCCCATGTTCTTCATGGCTCTGTGCCGTGGATTCCATTGTACAAATCGAAATACTATGTTGCTGGGAAATGCTGGGAGGATATTTACAATGCAATTGTTGATGCTAAGTACTTTATCTACATAACTGGTTGGTCTGTGTACACTGAAATCACCTTGATCAGAGACTCAGAAAATAGAGACTCAGAAAAAAGCATCACACTTGGGAAGCTGCTAAAGAAGAAAGCTGATGAAGGTGTCACTGTTCTCATGCTTGTTTGGGATGACAGAACCTCTGTTCCTGATTTCAAGAAAGATGGTTTGATGGCAACCCATGATCAGGAAACTGCAGTGTATTTCCGAAACACAAAGGTGCATTGTGTTCTGTGCCCGCGTGATCCTGGTAATGGAAGAAGCATAGTTCAAGGGTTTGAAATCTCAACCATGTTCACTCATCACCAGAAGAGTGTAATTCTTGACAGCCATTTTCAAGGATCAGAGAAGCGAACCGTTACTAGTTTTGTTGGTGGGATTGATCTCTGTGATGGGAGATATGACACACAAGAACATCCTCTATTTTCATCTCTGAAAACTGAGCATCATGATGATTTCCACCAGCCAAATTTCCCAGGGGCTTCCATTAACAAAGGAGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAATTGGAAGGACCAATTGCATTTGATGTGTTGTGTAATTTTGAGCAAAGGTGGGATAAGCAAGTTGGAAGGAAGCAATTTTTACTCTCTTCAAGCTTTTTTGATAAGTATCTTGTAGATAAATCCACTGCAGTAGAGAGAGATGAAAATGAGAAATGGAATGTTCAGTTGTTCAGGTCAATTGATGGTGGTGCTGCTTCTGGTTTCCCACAAGAACCAGAGGAAGCTTCTGAAAAGGGTCTTGTCAGTGGCAAAGATAACATCATTGATAGAAGCATTCAAGACGCATACATAAATGCTATAAGAAGAGCAAAGAACTTCATCTACATTGAAAATCAGTATTTCCTAGGGAGTTCATATGGTTGGAAATCATCTGATATCAAAGTTGAGGATATCAATGCTTTGCATCTTATACCAAAGGAGCTTTCACTGAAGATTGTGAGTAAGATTGAAGCTGGAGAGAGGTTTGCTGTTTACATTGTGATACCAATGTGGCCAGAAGGTGTGCCTGAGAGTGGTTCAGTTCAAGCAATATTGGATTGGCAGAGGAGGACAATGGAGATGATGTATTCTGATATAGCTGAAGCCATTAGGAGAAAGGGAATTAGAGCTAATCCAAGAGATTACTTGACATTTTTCTGCCTTGGAAACCGTGAGGGTAAGAAAGATGATGAGCTTACTCCTACAGAGGCACCAGAGCCAGGCAGTGATTATAGTAGAGCACAAAAGTCCAGAAGATTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAGTACATAATCATTGGTTCTGCCAACATAAACCAGAGATCAATGGATGGTGGAAGAGATACAGAGATTGCAATGGGTGCATTCCAACCACGCCATGCCACATACAATGGTCCCCCAAGAGGACAAATCTATGGATTCAGGCGTGCACTATGGTTTGAGCACCTTGGTGATCTTGGTGACACAAGCATCTTTAACAATCCAGAAAGCTTGAACTGCATCAATCTTGTGAATCGCCTTGCTGAGAACAACTGGGACATTTACTCAAAGGAAACATTTGATGAATTCAGAGCATTTCACCACCTCATGCGTTACCCCATAGAAGTGACCAACAATGGAGCCATAAAAACATTTCCAGGGCTTGAATATTTTCCAGATACAAAGGCTCGGATTCTGGGTTCCAAATCAGAGTACCTTCCTCCAATTCTCACCACCTAG 4836 0.4214 MPQLLHGKLKVTIFEVDRLQAGCNLEFLRKGTTQKGKRLLAQVKGCLLCRPEIVGTRLYATVDLDKARVRRTRMIGNQPSNPKWKESFEIYCAHHISNIIFTVKDDNPIGATLIGRAYIPVEQVIKTPIINRWVEILDEEDHRPVPGGSKIRVSVQFSSVTEDNACLWSQGIHVPFSGVPRTFFNQRQGCSLTLYQDAHVPDGSTPWIPISGTKYYVPARCWEDIYSAIMDAKHFIYIAGWSVYTEINLVRDPKNLGSESVITLGELLKMKADGGVNVLMLVWDDRTSVPDFKKDGLMATHDQETAQYFRNTKVHCVLCPRNPDNGRSIVQGLQISTMFTHHQKTIVLDSQVTGLEKRSVTSFIGGLDLCDGRYDTREHPLFSTLNTVHHADFHQPNFPGASIKKGGPREPWHDIHCKLEGPIAWDVLFNFEQRWEKQVGKQFLMSIDELDRFLVHPSDAMVSEEDKDTWSVQLFRSIDGGAVSSFPQAPDEVAEFGLISGKDNVIDRSIQDAYINAIRRAKKFIYIENQYFLGSSYGWKSSDIKVEDINALHLIPKELSLKIVSKIEAGERFVVYVVIPMWPEGMPESASVQAILDWQRRTMEMMYSDIADAIKKKNIEAHPRDYLTFFCLGKRESKIEGEYTPPEEPEPDSDYRRAQNARRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPHHLASNGPQRPQGQIYGFRRALWYEHIGYAHDVFDEPESEECVKLVNRIAETNWELYTKDTVDESVASVHILRYPNNIMSHLLHGRLDVIIYEVDTLQTLNRCMFNICNKGPSSGTGKKFLSQLKSCLLCQYHCQPEITGIGLYATVDLDKARVARTRVITNQTSSPKWNETFHIYSAHSISNIIFTVKQANPVSATLIGRAYVPVDQLLQGNIVDKWVKILDVNHNPLQGGPEIHVRIQFFDVKNDANWSQGLRTPQFQGVPHTFFNQKQGCRVTLYHDAHVLHGSVPWIPLYKSKYYVAGKCWEDIYNAIVDAKYFIYITGWSVYTEITLIRDSENRDSEKSITLGKLLKKKADEGVTVLMLVWDDRTSVPDFKKDGLMATHDQETAVYFRNTKVHCVLCPRDPGNGRSIVQGFEISTMFTHHQKSVILDSHFQGSEKRTVTSFVGGIDLCDGRYDTQEHPLFSSLKTEHHDDFHQPNFPGASINKGGPREPWHDIHCKLEGPIAFDVLCNFEQRWDKQVGRKQFLLSSSFFDKYLVDKSTAVERDENEKWNVQLFRSIDGGAASGFPQEPEEASEKGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSSYGWKSSDIKVEDINALHLIPKELSLKIVSKIEAGERFAVYIVIPMWPEGVPESGSVQAILDWQRRTMEMMYSDIAEAIRRKGIRANPRDYLTFFCLGNREGKKDDELTPTEAPEPGSDYSRAQKSRRFMIYVHSKMMIVDDEYIIIGSANINQRSMDGGRDTEIAMGAFQPRHATYNGPPRGQIYGFRRALWFEHLGDLGDTSIFNNPESLNCINLVNRLAENNWDIYSKETFDEFRAFHHLMRYPIEVTNNGAIKTFPGLEYFPDTKARILGSKSEYLPPILTT* 1612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3877 1611 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1454 1481 IPR001736 GO:0003824
Lja1g3877 1611 PANTHER PHOSPHOLIPASE D 3 785 IPR015679 -
Lja1g3877 1611 CDD C2_plant_PLD 1 157 - -
Lja1g3877 1611 Pfam C2 domain 8 135 IPR000008 -
Lja1g3877 1611 Pfam C2 domain 849 927 IPR000008 -
Lja1g3877 1611 PANTHER PHOSPHOLIPASE D ALPHA 3 3 785 - -
Lja1g3877 1611 PANTHER PHOSPHOLIPASE D ALPHA 3 787 1611 - -
Lja1g3877 1611 SUPERFAMILY Phospholipase D/nuclease 1288 1523 - -
Lja1g3877 1611 SUPERFAMILY Phospholipase D/nuclease 953 1233 - -
Lja1g3877 1611 SUPERFAMILY Phospholipase D/nuclease 176 443 - -
Lja1g3877 1611 Gene3D C2 domain 3 159 IPR035892 -
Lja1g3877 1611 SMART C2_3c 793 925 IPR000008 -
Lja1g3877 1611 SMART C2_3c 8 133 IPR000008 -
Lja1g3877 1611 ProSiteProfiles C2 domain profile. 770 926 IPR000008 -
Lja1g3877 1611 ProSiteProfiles C2 domain profile. 1 134 IPR000008 -
Lja1g3877 1611 Gene3D C2 domain 843 960 IPR035892 -
Lja1g3877 1611 SUPERFAMILY Phospholipase D/nuclease 510 749 - -
Lja1g3877 1611 Gene3D Endonuclease Chain A 207 451 - -
Lja1g3877 1611 Pfam Phospholipase D C terminal 739 785 IPR024632 -
Lja1g3877 1611 Pfam Phospholipase D C terminal 1530 1601 IPR024632 -
Lja1g3877 1611 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 158 IPR035892 -
Lja1g3877 1611 Gene3D Endonuclease Chain A 1001 1261 - -
Lja1g3877 1611 CDD PLDc_pPLD_like_1 1004 1177 - -
Lja1g3877 1611 PANTHER PHOSPHOLIPASE D 787 1611 IPR015679 -
Lja1g3877 1611 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 1127 1163 IPR001736 GO:0003824
Lja1g3877 1611 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 790 951 IPR035892 -
Lja1g3877 1611 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 337 373 IPR001736 GO:0003824
Lja1g3877 1611 CDD C2_plant_PLD 789 949 - -
Lja1g3877 1611 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 664 691 IPR001736 GO:0003824
Lja1g3877 1611 SMART pld_4 1454 1481 IPR001736 GO:0003824
Lja1g3877 1611 SMART pld_4 337 373 IPR001736 GO:0003824
Lja1g3877 1611 SMART pld_4 1127 1163 IPR001736 GO:0003824
Lja1g3877 1611 SMART pld_4 664 691 IPR001736 GO:0003824
Lja1g3877 1611 Pfam Phospholipase D Active site motif 1127 1163 IPR001736 GO:0003824
Lja1g3877 1611 Pfam Phospholipase D Active site motif 1455 1481 IPR001736 GO:0003824
Lja1g3877 1611 Pfam Phospholipase D Active site motif 665 691 IPR001736 GO:0003824
Lja1g3877 1611 Pfam Phospholipase D Active site motif 337 373 IPR001736 GO:0003824
Lja1g3877 1611 Gene3D Endonuclease Chain A 1269 1500 - -
Lja1g3877 1611 Gene3D Endonuclease Chain A 478 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3877 Lja-Chr1 48897011 48908513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3877 3 787 Phospholipase D Gene Family (Wang group) AT3G15730 63.224 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3877 K01115 - gmx:100791688 1330.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3877 1 48897011 48908513 Lja1g3877 1 48897011 48908513 ECH