Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3876 ATGGTACAAGCCAAAAAGTTCAGAGGAGTTAGGCAGCGCCAGTGGGGCTCCTGGGTGTCAGAGATTCGCCACCCATTACTGAAGAGAAGGGTGTGGCTAGGAACATTTGAGACAGCAGAGGCAGCAGCAAGGGCATATGACCAAGCAGCAATTTTGATGAATGGACAGAATGCCAAGACCAATTTCCCCAATTCAAGGAACCAAGCTGGAGATGCTGCAACCTCGAATTGTGATGATGACTCTTTCTTATCTCCCAAGGCACTTTCAGAGCTTCTCAGCACAAAGCTCAGAAAATACTGCAAAGACCCATCTCCATCTGTCACATGTCTGAGGCTAGATGCTGATAATTCCCACATTGGAGTGTGGCAGAAAGGAGCAGGGCCTCATTCTAACTCTAATTGGGTTATGAGGGTGGAGCTTGGGAAGAAACAGAATGAGGGACATTCAGTTTCCACAGGTTCACCACAACATGTTTGTAGTAATGCTGCAAAGAGGGTGGAAGAAGAGGACAGAGTTGCTTTACAGATGATTGAGGAGCTGCTTAATTGGAACTATCCTTGTGCTTCTTCAACTTCAAGTAACTCCCAGCAGGAAGAAAAATTGAATCTTCCATGTCATGATGGATGA 627 0.4609 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSRNQAGDAATSNCDDDSFLSPKALSELLSTKLRKYCKDPSPSVTCLRLDADNSHIGVWQKGAGPHSNSNWVMRVELGKKQNEGHSVSTGSPQHVCSNAAKRVEEEDRVALQMIEELLNWNYPCASSTSSNSQQEEKLNLPCHDG* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3876 208 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Lja1g3876 208 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Lja1g3876 208 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Lja1g3876 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 190 - -
Lja1g3876 208 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Lja1g3876 208 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 190 - -
Lja1g3876 208 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Lja1g3876 208 MobiDBLite consensus disorder prediction 189 208 - -
Lja1g3876 208 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Lja1g3876 208 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Lja1g3876 208 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3876 Lja-Chr1 48888787 48890265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3876 1 192 AP2-EREBP Transcription Factor Family AT5G25390 60.417 1.81e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lja1g3876 AP2 1.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3876 - - lang:109326202 290.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3876 1 48888787 48890265 Lja1g3876 1 48888787 48890265 ECH
Lja4g1934 4 19757622 19758878 Lja1g3876 1 48888787 48890265 ECH