Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3873 ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGCCGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTACCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATGGACTTGTGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATCGTAG 1284 0.4346 MAEIKDEGYEEELLDYEEEEDKALDSAGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3873 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 394 IPR027417 -
Lja1g3873 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Lja1g3873 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Lja1g3873 427 SMART helicmild6 302 383 IPR001650 -
Lja1g3873 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Lja1g3873 427 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE 27 422 - -
Lja1g3873 427 Gene3D - 259 426 IPR027417 -
Lja1g3873 427 Gene3D - 42 258 IPR027417 -
Lja1g3873 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 422 - -
Lja1g3873 427 SMART ultradead3 65 266 IPR014001 -
Lja1g3873 427 CDD SF2_C_DEAD 263 392 - -
Lja1g3873 427 CDD DEADc_DDX39 45 252 - -
Lja1g3873 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Lja1g3873 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3873 Lja-Chr1 48866668 48873117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3873 27 427 Eukaryotic Initiation Factors Gene Family AT5G11200 83.032 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3873 K12812 - gmx:100808957 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3873 1 48866668 48873117 Lja1g3873 1 48866668 48873117 ECH
Lja1g3873 1 48866668 48873117 Lja5g2839 5 55895463 55906839 ECH
Lja5g2839 5 55895463 55906839 Lja1g3873 1 48866668 48873117 PCT