Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3872 ATGTTTCCTGCACTTCAATTTTGGTTACTGCACCTTCTTTTAATTTTCAACCCTGTCTCAAATGCAGTTGCCTCTACATTAGGAAACAAGTCTGATCATTTAGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATTTGGGGTCTTGGTCTCTTGGAATGGTTCCACCCACTTTTGTAAGTGGCATGGAATCTCATGCATGAGTCAAAGAGTTACAGAGTTGAACCTAGAAGGATACCAATTGCATGGAACTATATCTCCCCATGTTGGCAATCTCTCTTCCTTGAAAATCCTAAACCTAGAAAGCAATAGTTTCTTTGGAAAAATCCCACATGAATTGGGTCACTTGTTTCAATTGCAACAACTGCTTCTCACCAACAACTCCTTGGTAGGAGAGATCCCTGCAAATTTGACAAGTTGCTCTGATCTCAGAGAATTGTACTTATATGGCAATAATCTAATTGGAAATATACCAATTGGAATTGGCTCTCTTTGGAAGCTTCAAGTATTAGAAATTGGGAAAAACAATTTAACTGGAGGGATCACTCCATTCATAGGGAATCTTTCATCCCTAATTGCTATCTCTGTGGCTTATAATAACTTAGAGGGACATGTTCCACATGAAATATGTTACCTTAAAAGCTTGAGAGTAATAGTATTAGAGGTCAACAATTTCTCTGGTACATTTCCTTCTTGTCTTTACAATATGTCATCCCTTACTACAATTGCAGCTGCAAAAAATCACTTTGATGGCTCTCTTCCACCTAGCATGTTCCACACCCTTCCTAATCTTCAATTTTTTGGAATTGGTGGGAATCAAATCTCAGGTTTTATCCCCACTTCCATTGCAAATGCTTCTACCCTGACAGTACTTGATATCACAAGAAACAATTTTACGGGACAAGTTCCAAGCCTAGGAAAGCTGCAAGATGTTTGGCTTCTACAGCTAACTTACAACAAACTAGGTGACAATTCATCTAATGATTTGGAATTTTTAAATTCACTGACAAATTGTAGCAAGTTGCAGAAGTTATCTTTAGCTGGGAATAACTTTGGAGGTAGTTTGCCTAATTCCTTAGGTAACATGTCCTCCCAACTTGAAAATATGCGTCTTGGGGGTAATCATATATCAGGGAAGATTCCTGCAGGGTTAGGAAATCTAATTGGCTTAACCCTTTTGGCCATGGAAAATAATCATTTTGAAGGGATGATTCCAGCCACCTTTTTGAAGTTTCACAAGATACAAGTGTTAGACTTGAGTGGAAACCAACTTTCAGGAAATATTCCAGTGTTCATAGGCAACCTCAGTCAGTTGTACCATTTGGGCTTAGAACAAAATAACTTAGAAGGAAACATTCCTCTAAGCATAGGAAATTGCCAAAAGTTACAATCTCTAAACCTTTCACATAACAACCTTAGTGGAACCATCCCCTCTGAGGTTTTTAGCCTTTTCTCATTAACAAACTACTTAGACTTGTCACAAAACTCATTGACTGGGAACCTACCTATTGAAGTGGGTAGACTCACAAATATCAATTGGTTGGATATCTCTGAGAATCATTTGTCAAGTGCCATTCCTGTAACCTTTGGAGAATGCCTAAGCTTGGAGTATCTTTATTTGCAAGGGAATTCCTTCCATGGAATCATTCCACCCTCTTTGGCTTCACTTAAAGTTCTTCAATGTTTAGACCTGTCAAGAAACCGGTTGTCGGGATCAATTCCTAAAGCCCTACAAAATCTTTTGTTTATGGAGTACTTCAATGTTTCTTTCAACATGTTGGATGGTGAAGTGCCAACAAAAGGTGTCTTTCAAAATGGAAGCGCGTTAGCAGTGACCGGAAACAAAAATCTTTGTGGTGGTATTTTAGAATTGCATCTACCACCATGCCTTAAGGAAGGTAAGAAACCTACAAAGCACCATAATTTCAAGTTGATAGCAGTGGCAGTTAGTGTGGTTGCTTTTCCTCTGATTTTAAGAAAGAAGCCATCTTCTGATTCACCAGTAATTGATCAACTGGCTAGGGTTTCATACCAAGACCTACATCAGGCAACCGATGGATTCTCAGCCGGAAACTTGATTGGATCAGGAAGTTTTGGTTCTGTATACAAAGGGAATCTTGTGTCAGAAGATAAAGATGTTGCTGTAAAGGTCTTGAACCTTAAAAAGAAGGGAGTTCACAAGAGTTTCGTTGCTGAATGTAATGCTCTTAAAAACATTAGGCATCGAAATCTGGTTAAAATTTTAACATGTTGTTCTAGTGCAAACTTCAATGGTGAAGAATTCAAAGCTCTAGTTTTTGAGTACATGGAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGATAGAGCATCCAAGAGCACTAGACCTTAATCAAAGATTAAATATCATCATCGATGTTGCCTCCGTATTACATTATCTTCATCATGGATGCGAGCAAGTAGTCGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATAATGACATGGTTGCTCATGTAAGTGATTTTGGCATAGCAAGGATTCTCTCAACCATTGATGGTACATCTGATAAGCAAACTAGTACAATTGGAATTAAAGGGACTATTGGATATGCTCCTCCAGAGTATGGAGCAGGATCTGAAGTGTCCATATATGGAGATATTTATAGCTTTGGGATTCTTATGTTGGAAATACTTACTGGAAGAAAACCAACTGATGAAATGTTTCAAGATGGTCTAAATTTGCAAAAATTTGTTGAAATTTCATTTCATGGTAATCTCTTACAAATTTTGGATCCATCACTTGTACCAGGAGAGGAGGAAGCAGAAGAAGGAAATGGTAGGACAGTTGATAAGTGCTTAGCATCTCTTTTTAGGATTGGACTTGCTTTTGCCTCTACATTAGGAAACAAGTCTGATCATTTAGCATTGCTCAAATTCAAGGAATCAATATCCAATGACCCATTTGGGGTCTTGGTCTCTTGGAATGGTTCCACCCACTTTTGTAAGTGGCATGGAATCTCATGCATGAGTCAAAGAGTTACAGAGTTGAACCTAGAAGGATACCAATTGCATGGAACTATATCTCCCCAGGTTGGCAATCTCTCTTCCTTGAAAATCCTAAACCTAGAAAGCAATAGTTTCTTTGGAAAAATTCCACATGAATTGGGTCACTTGTTTCAATTGCAAAAACTGCTTCTCACCAACAACTCCTTGGTAGGAGAGATCCCTGCAAATTTGACAAGTTGCTCTGATCTCAGAGAATTGTACTTATATGGCAATAATCTAATTGGAAATATACCAATTGGAATTGGCTCTCTTTGGAAGCTTCAAGTATTAGAAATTGGGAAAAACAATTTAACTGGAGGGATCAGACCATTCATAGGGAATCTTTCATCCCTAATTGCTATCTCTGTGGCTTATAATAACTTAGAGGGACATGTTCCACATGAAATATGTTACCTTAAAAGCTTGAGAGTAATAGTATTAGAGGTCAACAATTTCTCTGGTACATTTCCTTCTTGTCTTTACAATATGTCATCCCTTACTACAATTGCAGCTGCAAAAAATCACTTTGATGGCTCTCTTCCACCTAGCATGTTCCACACCCTTCCTAATCTTCAATTTTTTGGAATTGGTGGGAATCAAATCTCAGGTTTTATCCCCACTTCCATTGCAAATGCTTCTACCCTGACAGTACTTGATATCACAAGAAACAATTTTACGGGACAAGTTCCAAGCCTAGGAAAGCTGCAAGATGTTTGGCTTCTACAGCTAACTTACAACAAACTAGGTGACAATTCATCTAATGATTTGGAATTTTTAAATTCACTGACAAATTGTAGCAAGTTGCAGAAGTTATCTTTAGCTGGGAATAACTTTGGAGGTAGTTTGCCTAATTCCTTAGGTAACATGTCCTCCCAACTTGAAAATATGCGTCTTGGGGGTAATCATATATCAGGGAAGATTCCTGCAGGGTTAGGAAATCTAATTGGCTTAACCCTTTTGGCCATGGAAAATAACCATTTTGAAGGGATGATTCCAGCCACCTTTTTGAAGTTTCACAAGATACAAGTGTTAGACTTGAGTGGAAACCAACTTTCAGGAAATATTCCAGTGTTCATAGGCAACCTCAGTCAGTTGTACCATTTGGGCTTAGAACAAAATAACTTAGAAGGAAACATTCCTCTAAGCATAGGAAATTGCCAAAAGTTACAATCTTTAAACCTTTCACATAACAACCTTAGTGGAACCATCCCCTCTGAGGTTTTTAGCCTTTTCTCATTAACAAACTACTTAGACTTGTCACAAAACTCATTGAGTGGGAACCTACCTATTGAAGTGGGTAGACTCACAAATATCAATTGGTTGGATATCTCTGAGAATCATTTGTCAAGTGCCATTCCTGTAACCTTTGGAGAATGCCTAAGCTTGGAGTATCTTTATTTGCAAGGGAATTCCTTCCATGGAATCATTCCACCCTCTTTGGCTTCACTTAAAGTTCTTCAATGTTTAGACCTGTCAAGAAACCGGTTGTCGGGATCAATTCCTAAAGCCCTACAAAATCTTTTGTTTATGGAGTACTTCAATGTTTCTTTCAACATGTTGGATGGTGAAGTGCCAACAAAAGGTGTCTTTCAAAATGGAAGCGCGTTAGCAGTGACCGGAAACAAAAATCTTTGTGGTGGTATTTTAGAATTGCATCTACCACCATGCCTTAAGGAAGGTAAGAAACCTACAAAGCACCATAATTTCAAGTTGATAGCAGTGGCAGTTAGTGTGGTTGCTTTTCTTCTGATTTTAAGAAAGAAGCCATCTTCTGATTCACCAGTAATTGATCAACTGGCTAGGGTTTCATACCAAGACCTACATCAGGCAACCGATGGATTCTCAGCCGGAAACTTGATTGGGTCAGGAAGTTTTGGTTCTGTATACAAAGGGAATCTTGTGTCAGAAGATAAAGATGTTGCTGTAAAGGTCTTGAACCTTAAAAAGAAGGGAGTTCACAAGAGTTTCGTTGCTGAATGTAATGCTCTTAAAAACATTAGGCATCGAAATCTGGTTAAAATTTTAACATGCTGTTCTAGTGCAAACTTCAATGGTCAAGAATTCAAAGCTCTTGTTTTTGAGTACATGGAAAATGGAAGCTTAGAACAATGGCTGCATCCAAGGATAGTGCATCCAAGAGCACTAGACCTTGATCAAAGATTAAATATCATCATCGATGTTGCCTCCGTATTACATTATCTTTATCATGGATGCGAGCAAGTAGTCGTTCATTGTGATCTAAAGCCAAGCAATGTCCTTCTTGATAATGACATGGTTGCTCATGTAAGTGATTTTGGCATAGCAAGGATTCTCTCAACCATTGATGGTACCTCTGATAAGCAAACTAGTACAATTGGAATTAAAGGGACTATTGGATATGCTCCTCCAGAGTATGGAGCAGGATCTGAAGTGTCCATATATGGAGATATTTATAGCTTTGGGATTCTTATGTTGGAAATACTTACTGGAAGAAAACCAACTGATGAAATGTTTCAAGATGGTCTAAATTTGCAAAAATTTGTTGAAATTTCATTTCATGGTAATCTCTTACAAATTTTGGATCCATCACTTGTACCAAGAGAGGAGGAAGCAGAAGAAGGAAATGGTAGGACAGTTGATAAGTGCTTAGCATCTCTTTTTAGGATTGGACTTGCTTGTTTAGCGGAATCGCCAAAAGAAAGGATGAATATGATGGATGTTAAGAGAGAGCTGAACATAATCAGAGAGGCCTTTCAAGCTGGTAAAATAAATAGAAACTGA 5799 0.3818 MFPALQFWLLHLLLIFNPVSNAVASTLGNKSDHLALLKFKESISNDPFGVLVSWNGSTHFCKWHGISCMSQRVTELNLEGYQLHGTISPHVGNLSSLKILNLESNSFFGKIPHELGHLFQLQQLLLTNNSLVGEIPANLTSCSDLRELYLYGNNLIGNIPIGIGSLWKLQVLEIGKNNLTGGITPFIGNLSSLIAISVAYNNLEGHVPHEICYLKSLRVIVLEVNNFSGTFPSCLYNMSSLTTIAAAKNHFDGSLPPSMFHTLPNLQFFGIGGNQISGFIPTSIANASTLTVLDITRNNFTGQVPSLGKLQDVWLLQLTYNKLGDNSSNDLEFLNSLTNCSKLQKLSLAGNNFGGSLPNSLGNMSSQLENMRLGGNHISGKIPAGLGNLIGLTLLAMENNHFEGMIPATFLKFHKIQVLDLSGNQLSGNIPVFIGNLSQLYHLGLEQNNLEGNIPLSIGNCQKLQSLNLSHNNLSGTIPSEVFSLFSLTNYLDLSQNSLTGNLPIEVGRLTNINWLDISENHLSSAIPVTFGECLSLEYLYLQGNSFHGIIPPSLASLKVLQCLDLSRNRLSGSIPKALQNLLFMEYFNVSFNMLDGEVPTKGVFQNGSALAVTGNKNLCGGILELHLPPCLKEGKKPTKHHNFKLIAVAVSVVAFPLILRKKPSSDSPVIDQLARVSYQDLHQATDGFSAGNLIGSGSFGSVYKGNLVSEDKDVAVKVLNLKKKGVHKSFVAECNALKNIRHRNLVKILTCCSSANFNGEEFKALVFEYMENGSLEQWLHPRIEHPRALDLNQRLNIIIDVASVLHYLHHGCEQVVVHCDLKPSNVLLDNDMVAHVSDFGIARILSTIDGTSDKQTSTIGIKGTIGYAPPEYGAGSEVSIYGDIYSFGILMLEILTGRKPTDEMFQDGLNLQKFVEISFHGNLLQILDPSLVPGEEEAEEGNGRTVDKCLASLFRIGLAFASTLGNKSDHLALLKFKESISNDPFGVLVSWNGSTHFCKWHGISCMSQRVTELNLEGYQLHGTISPQVGNLSSLKILNLESNSFFGKIPHELGHLFQLQKLLLTNNSLVGEIPANLTSCSDLRELYLYGNNLIGNIPIGIGSLWKLQVLEIGKNNLTGGIRPFIGNLSSLIAISVAYNNLEGHVPHEICYLKSLRVIVLEVNNFSGTFPSCLYNMSSLTTIAAAKNHFDGSLPPSMFHTLPNLQFFGIGGNQISGFIPTSIANASTLTVLDITRNNFTGQVPSLGKLQDVWLLQLTYNKLGDNSSNDLEFLNSLTNCSKLQKLSLAGNNFGGSLPNSLGNMSSQLENMRLGGNHISGKIPAGLGNLIGLTLLAMENNHFEGMIPATFLKFHKIQVLDLSGNQLSGNIPVFIGNLSQLYHLGLEQNNLEGNIPLSIGNCQKLQSLNLSHNNLSGTIPSEVFSLFSLTNYLDLSQNSLSGNLPIEVGRLTNINWLDISENHLSSAIPVTFGECLSLEYLYLQGNSFHGIIPPSLASLKVLQCLDLSRNRLSGSIPKALQNLLFMEYFNVSFNMLDGEVPTKGVFQNGSALAVTGNKNLCGGILELHLPPCLKEGKKPTKHHNFKLIAVAVSVVAFLLILRKKPSSDSPVIDQLARVSYQDLHQATDGFSAGNLIGSGSFGSVYKGNLVSEDKDVAVKVLNLKKKGVHKSFVAECNALKNIRHRNLVKILTCCSSANFNGQEFKALVFEYMENGSLEQWLHPRIVHPRALDLDQRLNIIIDVASVLHYLYHGCEQVVVHCDLKPSNVLLDNDMVAHVSDFGIARILSTIDGTSDKQTSTIGIKGTIGYAPPEYGAGSEVSIYGDIYSFGILMLEILTGRKPTDEMFQDGLNLQKFVEISFHGNLLQILDPSLVPREEEAEEGNGRTVDKCLASLFRIGLACLAESPKERMNMMDVKRELNIIREAFQAGKINRN* 1933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3872 1932 Pfam Leucine rich repeat N-terminal domain 968 1006 IPR013210 -
Lja1g3872 1932 Pfam Leucine rich repeat N-terminal domain 30 68 IPR013210 -
Lja1g3872 1932 PANTHER OS04G0122200 PROTEIN 19 961 - -
Lja1g3872 1932 PANTHER OS04G0122200 PROTEIN 964 1927 - -
Lja1g3872 1932 ProSitePatterns Protein kinases ATP-binding region signature. 695 718 IPR017441 GO:0005524
Lja1g3872 1932 SUPERFAMILY L domain-like 367 621 - -
Lja1g3872 1932 SUPERFAMILY Protein kinase-like (PK-like) 665 914 IPR011009 -
Lja1g3872 1932 CDD STKc_IRAK 1633 1920 - -
Lja1g3872 1932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 817 829 IPR008271 GO:0004672|GO:0006468
Lja1g3872 1932 ProSiteProfiles Protein kinase domain profile. 1627 1924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3872 1932 SUPERFAMILY L domain-like 1305 1559 - -
Lja1g3872 1932 SUPERFAMILY Protein kinase-like (PK-like) 1603 1918 IPR011009 -
Lja1g3872 1932 SMART serkin_6 689 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3872 1932 SMART serkin_6 1627 1924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3872 1932 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1755 1767 IPR008271 GO:0004672|GO:0006468
Lja1g3872 1932 Gene3D Transferase(Phosphotransferase) domain 1 771 965 - -
Lja1g3872 1932 Gene3D Transferase(Phosphotransferase) domain 1 1709 1930 - -
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 967 1122 IPR032675 -
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Lja1g3872 1932 PANTHER LRR RECEPTOR-LIKE KINASE 19 961 - -
Lja1g3872 1932 PANTHER LRR RECEPTOR-LIKE KINASE 964 1927 - -
Lja1g3872 1932 ProSiteProfiles Protein kinase domain profile. 689 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 1123 1261 IPR032675 -
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 184 323 IPR032675 -
Lja1g3872 1932 Pfam Protein tyrosine and serine/threonine kinase 1630 1915 IPR001245 GO:0004672|GO:0006468
Lja1g3872 1932 Pfam Protein tyrosine and serine/threonine kinase 692 906 IPR001245 GO:0004672|GO:0006468
Lja1g3872 1932 ProSiteProfiles Leucine-rich repeat profile. 463 485 IPR001611 GO:0005515
Lja1g3872 1932 SUPERFAMILY L domain-like 969 1261 - -
Lja1g3872 1932 ProSitePatterns Protein kinases ATP-binding region signature. 1633 1656 IPR017441 GO:0005524
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 324 639 IPR032675 -
Lja1g3872 1932 Gene3D Ribonuclease Inhibitor 1262 1577 IPR032675 -
Lja1g3872 1932 ProSiteProfiles Leucine-rich repeat profile. 1401 1423 IPR001611 GO:0005515
Lja1g3872 1932 SMART LRR_typ_2 1327 1350 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 558 581 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1351 1375 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 94 117 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1056 1080 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1448 1472 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 118 142 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1496 1519 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1399 1423 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 413 437 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 1032 1055 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 461 485 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 510 534 IPR003591 -
Lja1g3872 1932 SMART LRR_typ_2 389 412 IPR003591 -
Lja1g3872 1932 Pfam Leucine rich repeat 1450 1509 IPR001611 GO:0005515
Lja1g3872 1932 Pfam Leucine Rich Repeat 463 480 IPR001611 GO:0005515
Lja1g3872 1932 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Lja1g3872 1932 Pfam Leucine Rich Repeat 1401 1418 IPR001611 GO:0005515
Lja1g3872 1932 Pfam Leucine Rich Repeat 1034 1056 IPR001611 GO:0005515
Lja1g3872 1932 Gene3D Phosphorylase Kinase; domain 1 1608 1708 - -
Lja1g3872 1932 Gene3D Phosphorylase Kinase; domain 1 670 770 - -
Lja1g3872 1932 SUPERFAMILY L domain-like 31 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3872 Lja-Chr1 48844305 48861582 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3872 29 959 Receptor kinase-like Gene Family AT3G47570 45.568 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja1g3872 PK_Tyr_Ser-Thr 2.2e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3872 - - qlo:115986126 1594.71