Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3860 ATGACGAAGAAGAAGAATTCCCTGGTGTTTATGGACGTGTCCATTGATGGGGATCCTGTAGAAAGGATGGTTTTTGAGCTTTTCTATGATATTGCTCCCAAGACTGCAGAAAACTTCCGTGCATTATGTACAGGAGAAAGAGGTGCCAGTCCAAGTACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCACATAACGAAAGGCTTCGTTGTGAAGGGTGGTGATTTTGTCAATCGAAATGGGACTGGTGGAGAAAGCATATATGGTTCGAAGTTTCCAGATGAGTCCCCTAGGCTAAAGCATGATTCCTCTGGCCTTTTGTCGATGGCAATTGCTGACCGTGACACTCTTGGTTCTCATTTTATCATCACTCTGAAAGCTGATCATCATCTTGATAGGAAGCATGTAGTCTTTGGGAAACTTGTGCAGGGTCATAATGTATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGGCATCCAACTGTAACTGTTAAAATTATTTATTGTGGTGAATATAATGAGGATGGAAAGAAAGTAAATAAATCAAAAATAGGGAAGGATGGATCTTCTGAAGCCAACAGCCATGAAATGCGGAGGAAGGGAAAGCACAAAAAATCTTCAAAAGACAGAAGGAGAAAGAGAAGATACCACTCATCTGACTCTGGGAGTTCTTCAGATTCAGACTTTGAATCCTCAGAAACTGATAGTGATTCCGAGTCAGATATGTCCTCATCTGACATAAGTTCCTCTAGTGATGACAGGCGCAAGAAGAGAAAGAGATCTAAGAAAGATAAACATAGACGTGGGAAAAGAAGAGATAAGCGCCGCGACAAAAAACGAAGGAGACGGGATAAAAAATTGAAGCGTAGATCAAGAAGGGAATCGGGCAGTGATTCAGCTAGTGAGAGTGACAGTGACAGTAGCTCAGATGGTGAAGGTCTAGATGCTCAACAGAAAGAGCTGAAGCGGAAAGATCATTCTCAGAAAAAAGTGGCTGAAATAAAGCCTCCCTTAGTGTTGGAGAAAGGTGTACCTACCATCCATCATAAGGAGGCGGAAGTCAGTATGCTAGAGAATGATGAAAAAATCGTGAAGGAAAATGGAGAGCGGCGCAGCAATGGCATTGGAGCTGGCTACAGATCTGACAGAAGTGAAGAGAGGCAGCCTGACGTGATGGATGATCATCCGGGCAAATCTAGGAGTCGAAGCAGGAGTCCTAAGCGAGCCATGAGTAAGAGTATGAGTATTAGTCCTAGGAGGAGTAAAAGCAAGAGCCCAAGTGTCACACCAAAAAGAAGATTGAACAAAGCACCAGGTGCTGGTAGAAGCCCTCCTCCATCAAGGAACATCAGCAGGAGTCCCGCTAGAAGCATCAGCAGGAGTCCCAGCCGAAGCATCAGCAGAAGCCCAGTAAGGGGCGGGAAGGGGAAAAGTATTAGTAGAAGCCCTGTGAGAACTCGTTCTCGTAGAAGTGTCAGTGCGAGTCCTGTAAGGTCCCTTTCTCGAAGCCGCCGGAGCAGGAGTTCTCCCAGAGCATCATCTCGAAAAACAATCAGCAGAAGCCCTGTAAGAGTCTCAAGGAAGAGTGTAAGCCGCAGTCCTGTGAGATCAAATGCAAGAAGCTTAAGCAGAAGCTCTGGCAGGGTCCCCTCTAAGAGAAGCATTAGCCGTAGTCCAGTTAGATCACCTGAAAGAACCTTAAGCAGAAGCACTGGTAGGGTCCTCTCAAAGAGAAGCATCAGCCGTAGTCCAGTTAGATCACCTGCAAGAAGCTTAAGCAGAAGCACTGGTAGGGTCCCCTCAAAGAGAAGCATTAGCCGTAGTCCAGTTAGATCACCAGCAAGAAGCATTAGCAGAAGTCCTGTCAGAGCACCAAGTAGAAGCATTAGCAGAAGTCCTGTCAGAGCACCAAGTAGAGGCAATCGTCGTAGTTATTCTAGGAGTCCTAGCCCTGTTCGTAGAGCAAGGACGCCTCGTCGGAGGAGTTTGTCGAGGAGTGTTTCACCTGATGCTTCACCAAAGCGAATCAGAAGGGGAAGAGGTTTCAGCGAACGATACTCGTATGCAAGAAGGTATCGAACCCCTTCTCGGTCTCCTGTGAGGTCATACCGGTTCAATGGAAGATATGACCGTGATAGATATTCTAGTTACAGAAGGTTTTCCCCTAGGCGTCACAGGAGCCCACCGCCACGTGGAAGAACTCCGCCAAGGTACCGAAGCAGGAGGAGCAGGACACCATCTGTGTCACCAAGCCCACGGTACCGAGCTCGACGATATAGTCGGTCCCGTAGCCCAGTTCGCAGTCCTTCCCCAGTTCGTCGCTCTCCTCGTGTGGAGAAGCGTGCGTCATACTCCCGGAGCAGGAGTCCATCAAAATCCAGGTCTTCTGTGGAATCACAATCTCCACGTAAAGCAAGTAGAGACAGGTCAGGATCATCATCCAGGAGCCCCGATGGAAAGAAAGGCCTGGTATCCTATGGCGATGGTTCTCCCTACTCAGGTCAGAGGTGA 2520 0.4742 MTKKKNSLVFMDVSIDGDPVERMVFELFYDIAPKTAENFRALCTGERGASPSTGKSLHYKGSFFHHITKGFVVKGGDFVNRNGTGGESIYGSKFPDESPRLKHDSSGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLVQGHNVLKKIEDVGDEEGHPTVTVKIIYCGEYNEDGKKVNKSKIGKDGSSEANSHEMRRKGKHKKSSKDRRRKRRYHSSDSGSSSDSDFESSETDSDSESDMSSSDISSSSDDRRKKRKRSKKDKHRRGKRRDKRRDKKRRRRDKKLKRRSRRESGSDSASESDSDSSSDGEGLDAQQKELKRKDHSQKKVAEIKPPLVLEKGVPTIHHKEAEVSMLENDEKIVKENGERRSNGIGAGYRSDRSEERQPDVMDDHPGKSRSRSRSPKRAMSKSMSISPRRSKSKSPSVTPKRRLNKAPGAGRSPPPSRNISRSPARSISRSPSRSISRSPVRGGKGKSISRSPVRTRSRRSVSASPVRSLSRSRRSRSSPRASSRKTISRSPVRVSRKSVSRSPVRSNARSLSRSSGRVPSKRSISRSPVRSPERTLSRSTGRVLSKRSISRSPVRSPARSLSRSTGRVPSKRSISRSPVRSPARSISRSPVRAPSRSISRSPVRAPSRGNRRSYSRSPSPVRRARTPRRRSLSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRFNGRYDRDRYSSYRRFSPRRHRSPPPRGRTPPRYRSRRSRTPSVSPSPRYRARRYSRSRSPVRSPSPVRRSPRVEKRASYSRSRSPSKSRSSVESQSPRKASRDRSGSSSRSPDGKKGLVSYGDGSPYSGQR* 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3860 839 MobiDBLite consensus disorder prediction 674 694 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 721 743 - -
Lja1g3860 839 Gene3D - 1 175 IPR029000 -
Lja1g3860 839 MobiDBLite consensus disorder prediction 316 339 - -
Lja1g3860 839 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 MobiDBLite consensus disorder prediction 488 506 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 804 818 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 411 433 - -
Lja1g3860 839 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 MobiDBLite consensus disorder prediction 180 839 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 201 218 - -
Lja1g3860 839 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 487 - -
Lja1g3860 839 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 487 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 383 403 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 258 293 - -
Lja1g3860 839 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Lja1g3860 839 MobiDBLite consensus disorder prediction 180 200 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 347 372 - -
Lja1g3860 839 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Lja1g3860 839 MobiDBLite consensus disorder prediction 515 654 - -
Lja1g3860 839 MobiDBLite consensus disorder prediction 449 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3860 Lja-Chr1 48721397 48726888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3860 26 170 U-box Gene Family AT5G67530 41.497 1.84e-21 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3860 K09566 - twl:120005456 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3860 1 48721397 48726888 Lja1g3860 1 48721397 48726888 ECH