Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3854 ATGGAGTTCTGGCTCATTGTCCTTGCCTTTCTCTGTCTTTTGATGCTCATAATGAGAGCTTTCCACTCACATCCCCTCCCTCCTGGGCCTTTCCACATTCCCTTCATCTCCAACATTCTCTTGCTACGAAAATCATTTTCAGAACTAGAGACAATTCTTCTAAACCTCCATGCAAAACATGGTCCTATAATCACATTCAACTTCTGGAATGGTCCACATATTTTCATAGTTGATCCCTCCCTTGCCCACCAAGCCTTAATTCAGAAAGGAACAATCTTCGCCGACCGCCCCAAATACCTTTCTAACAATGAACAATTTAACATCGCCTCCTCCTTCTATGGCCCAAATTGGCGTGTCCTCCGCCGCAACCTCACCTCCTTGCTTCACCCATCACGATCCAAATCCTTCTCTAGCACCCGCAAGCGGGTCCTGAATAATCTTCTGAATAGGTTGAAATCGGATGCAGTCATGCAGAATCATGTCATCCCATTAAACTTGCTGGTGTTCATGTGTTTCGGTGAAAGAGTTGATGAGCATTACATTAGACACATCGAGTCCATCCAGCGTAGTTTGATTGTCAACACTGGCAGATTCAATCTACTCAATTTCTTTCCATCAATGGTTGCTCGCGTCTTGTTCCGAAAACGCTGGCAGGAGCTGTTGCACCTTCGGAAGGCCCAGAAAGATGTTTTGTCTGAATTAATTGAAGCAAGAAAACAGAGTTTCGAAGACAGAGTCAGTAGAAACATGAAGGACAATGACACTGATGATGATGATGATGATGAATTTGTTGGTTGCTATGTGGATACTTTGTTAGATTTTCAATTACCTGAGGAGAAACGCAAGCTGAATGAAGGTGAAATTTTGAGTCTATGTTCAGAGTTTCTCAATGCTGGAACAGATACAACTTCAACAGCAATGGAGTGGGTGATGGCGAATTTGATTGAAGGGGTTGTAGGTGAAAGAGGAAAAAGGGAAGTGACAGAGGAAGATTTGGTGAAGTTGCCATATTTGAAGGCTGTGATTTTAGAAGTTCTGAGGCTTCACCCTCCCTCACACTTTGCAATCCCACATCGGGTAACTGAGGATGTTGTTTTGAATGGTTTCTTGGTGCCAAGAAAGGGGACAGTGAATTTTTTGGTGGCGGAGATGGGGAGGGATCCGAAGGTGTGGGAGGATGCTATTGAGTTCAAGCCAGAGAGATTTTTGAGTGATGATGATCAGAAGGGATTGTTTGATATTAGTGGGATTAAAGAGATAAAGATTATGCCATTTGGTGCAGGGAGGAGGATTTGTCCAGCTTATAACTTGGCAATGCTGCATTTGGAGTACTTTGTGGCAAATTTAATATGGAATTTTGAATGGAAGGCTTCTTCACTTGGAGGTGATGTTGATATGTCAGAAAGACAGGAGTTTACAATGGTCATGAAACATCCATTACAAGCTCTGATTTCTCCTAGGTTATAG 1467 0.4294 MEFWLIVLAFLCLLMLIMRAFHSHPLPPGPFHIPFISNILLLRKSFSELETILLNLHAKHGPIITFNFWNGPHIFIVDPSLAHQALIQKGTIFADRPKYLSNNEQFNIASSFYGPNWRVLRRNLTSLLHPSRSKSFSSTRKRVLNNLLNRLKSDAVMQNHVIPLNLLVFMCFGERVDEHYIRHIESIQRSLIVNTGRFNLLNFFPSMVARVLFRKRWQELLHLRKAQKDVLSELIEARKQSFEDRVSRNMKDNDTDDDDDDEFVGCYVDTLLDFQLPEEKRKLNEGEILSLCSEFLNAGTDTTSTAMEWVMANLIEGVVGERGKREVTEEDLVKLPYLKAVILEVLRLHPPSHFAIPHRVTEDVVLNGFLVPRKGTVNFLVAEMGRDPKVWEDAIEFKPERFLSDDDQKGLFDISGIKEIKIMPFGAGRRICPAYNLAMLHLEYFVANLIWNFEWKASSLGGDVDMSERQEFTMVMKHPLQALISPRL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3854 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 425 434 IPR017972 GO:0005506|GO:0016705
Lja1g3854 488 PANTHER CYTOCHROME P450 5 486 - -
Lja1g3854 488 SUPERFAMILY Cytochrome P450 27 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PANTHER FLAVONOID 3'-MONOOXYGENASE-RELATED 5 486 - -
Lja1g3854 488 PRINTS E-class P450 group I signature 339 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 81 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 422 432 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 57 76 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 162 180 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 432 455 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 287 304 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS E-class P450 group I signature 380 404 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 Pfam Cytochrome P450 27 480 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS P450 superfamily signature 298 315 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS P450 superfamily signature 340 351 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 PRINTS P450 superfamily signature 423 432 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lja1g3854 488 Gene3D Cytochrome P450 21 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3854 Lja-Chr1 48676646 48678183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3854 1 487 Cytochrome P450 AT1G64940 49.904 2.88e-171 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3854 K24184 - jre:109003786 547.354