Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3850 ATGTCGTCAGCGCCGCTGCGTAGAAAAAAGGTGTTTGAAAAGTGGTGCCGCAGCCACCACGACGAGGCAGCGGATGACGAGACAGACAGAGATTGTATTGACAGTATCCATGAGATGTCCAAGGATGAGGGCAGCCAATACAGCCTCACCGGCATCCCTCTTCCACCGCTCGGCGCCAACGCCAACCCCAACTACCGGCGGCCCAAGCTCGGCAGTTTCATCATCTCACCATTTAGCCATCGTTACAAGATGTGGGAATTGTTTCTGGCGGTTTTAGTTGTCTACACTGCATGGGTGGTCCCTTTTGAGTTTGGATTCCTTGATGAACCGATGCTAGGTCTTTCAATTAGTGACAACATTGTGAATGTGTTTTTCATCGCGGACATTGTGCTGAGATTCTTTGTTGCATACCTAGACAAGTCTACATATCTGATGGTCGACGATCGTAAGCGCATTGCTTTGAGATATCTCAGAACATGGTTCACCTTTGATGCCATTGCCTCCGTTCCGTCGGAGCTTTCCCACAAGTTATTGCCCGGTAAATTGAAGACATACGGCTACTTCACTATGCTCCGCCTCTGGCGTCTCCGTAGAGTCAGTAAAATGTTTGCAAGTTTAGAGAAGGACAAGAATTATAACTACTTCTGGGTGCGGTGTTCAAAGCTCATATGTGTAACTCTATTTTCAGTGCATTTTGCTGGCTGCATTTTCTTTTTTATTGGTGCCCATCATGACCGAACAACATCTTGGATTTCGATAGTCCCTGATGCCGCTAAGACGAGTCTCATGAGTAACTATGTGACATCAGTGTACTGGTCCATAACGACTCTTTCATCAGTTGGTTATGGCGATCTGCATCCTGTAAATACAGGGGAGATGGTGTTTGACATATTCTACATGTTCTTTAATCTGGGACTCACAGCATATCTCATTGGAAACATGACGAACTTAGTTGTTCATCGGACAAGCAGAACAAGGAAATATAGAGACACAGTTCAAGCAGCCGCAGGTTTCGCGCAGCGGAATCTGTTACCTATCAGGCTGCAAGAGCGGATGCTTGCTCATTTGCAAACCAAATACAGAACTGATTTAGAAGGACTGCAGCATCAAGAGATTATTGATTCCCTTCCAAAGGCTATTCGATCTAGTATCTCACAATTTCTATTCCTTCCAATCCTGGACAAAGTGTACTTGTTTCATGGAGTGTCATGTGACCTTCTTTTTCAATTGGTCACAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACGGACTTCTATATCTTTGTCACCGGGGAAGGAGAACTCATCAAAGAAAAGAAGGGAGCTGAAACTATTGTTGGTGAGATAAAGGCAGGGGATGTAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGCAGTTTACAGTTCGAACCAAAAGATTGTGCCAAATTCTGCGCTTGAATCGTACTACATTTCTAAATCTTGCACATTCAAATGTTGGAGATGGGACAGTTATCATGAACAATTTTCTCCATCATTTGCAAACATCAGACCTTCCAGATATGGATGTTGTTTTGGCAGAAACACAAGCCATGCTGGCTCGGGGTAAAATGGATTTACCCGTCAGCGCGTGCTTTGCGGTGGAGAGAAAGGACGATGAATTGTTAAGTCGGTTGCTGAAGCAGGGTTCAGATCCAAACGAAATTGATCCTAATAAGAATGGAAAGACAGCACTGCATATTGCAGCTTTCAAAGGCTATAGGCACTGTGTGGCTTTGCTTCTAGAACATGGTGCTGACGCAAATAGTAGAGATAGGGATGGAAGTGTGCCACTATGGGAAGCAATGCTGGGTGGGCATGAATCTGTGAAGGAGCTTCTTATAGACAATGGTGCAGAGTTATCAGCAGCTGATCCAGGCTTTGTAGCATGCTCTGCTGTTGAGCAGAACAACTTGAAATTGCTCAAGGAAATTGTTCAGCATGGTGTGGATGTGACACAGCCCAAAGAGAATGGAATCACTGCACTGCATTCTGCAGTGTGTGAAGGAAACATAGAGCTGGTGCAGTTCCTTCTGGACCAAGGAACAGATGTTGATAAACCAGATGATAAGGGTTGGACTCCAAGGGCCATGGCAGAACAACAAGGTCATGAAGAAATCAAGAACATATTCCAGACCAAAGGTGGAGGTGATGACATGGTGCCTCTAATGAGAAAGCCAATGCATGGAAATGTAACTTGCATTGGGATTGGCAAGTTTCAAAGTGAACCAAACATGCCTGCTTGTGTTTCCCAAGATAGCATGCCACAACCACCTAGTGAAGAGTTAAGATGGCTAGATAATCATAGGAGGAGAAGGGCTAGCACTTTTCATAATTCCATTTTTGGCACCATCTCAGCTGCTAATCGAGATAAATGGGAACGCAAGTCACATGAAAACAGTAGCAGTAGCCATGTCAATGGATCAGAAGCCATTAGAGTGACAATTAGTTGTCCTGAGAAAGGTGACCCTGCTGGAAAGCTAATTTTGCTTCCCAAGTCCCTTGAGGAACTGCTAGATGTTGGTGCCAAAAAGTTTGATTTCTCTCCCACAAAAATCTTGACCACAGAAGGAGCTGAAATTGATGACATAAACCTTATACGAGATGGTGATCATGTTATTATTGCAAGCGAGTGA 2688 0.4449 MSSAPLRRKKVFEKWCRSHHDEAADDETDRDCIDSIHEMSKDEGSQYSLTGIPLPPLGANANPNYRRPKLGSFIISPFSHRYKMWELFLAVLVVYTAWVVPFEFGFLDEPMLGLSISDNIVNVFFIADIVLRFFVAYLDKSTYLMVDDRKRIALRYLRTWFTFDAIASVPSELSHKLLPGKLKTYGYFTMLRLWRLRRVSKMFASLEKDKNYNYFWVRCSKLICVTLFSVHFAGCIFFFIGAHHDRTTSWISIVPDAAKTSLMSNYVTSVYWSITTLSSVGYGDLHPVNTGEMVFDIFYMFFNLGLTAYLIGNMTNLVVHRTSRTRKYRDTVQAAAGFAQRNLLPIRLQERMLAHLQTKYRTDLEGLQHQEIIDSLPKAIRSSISQFLFLPILDKVYLFHGVSCDLLFQLVTEMKAEYFPPKEDVILQNEAPTDFYIFVTGEGELIKEKKGAETIVGEIKAGDVVGEIGVLCYRPQQFTVRTKRLCQILRLNRTTFLNLAHSNVGDGTVIMNNFLHHLQTSDLPDMDVVLAETQAMLARGKMDLPVSACFAVERKDDELLSRLLKQGSDPNEIDPNKNGKTALHIAAFKGYRHCVALLLEHGADANSRDRDGSVPLWEAMLGGHESVKELLIDNGAELSAADPGFVACSAVEQNNLKLLKEIVQHGVDVTQPKENGITALHSAVCEGNIELVQFLLDQGTDVDKPDDKGWTPRAMAEQQGHEEIKNIFQTKGGGDDMVPLMRKPMHGNVTCIGIGKFQSEPNMPACVSQDSMPQPPSEELRWLDNHRRRRASTFHNSIFGTISAANRDKWERKSHENSSSSHVNGSEAIRVTISCPEKGDPAGKLILLPKSLEELLDVGAKKFDFSPTKILTTEGAEIDDINLIRDGDHVIIASE* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3850 895 Gene3D - 83 319 - -
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 310 319 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 118 128 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 292 303 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 95 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 129 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 PRINTS EAG/ELK/ERG potassium channel family signature 266 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3850 895 ProSiteProfiles Ankyrin repeat profile. 675 707 IPR002110 GO:0005515
Lja1g3850 895 Pfam Ion transport protein 83 325 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g3850 895 ProSiteProfiles Ankyrin repeat region circular profile. 675 707 - -
Lja1g3850 895 ProSiteProfiles cAMP/cGMP binding motif profile. 398 517 IPR000595 -
Lja1g3850 895 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Lja1g3850 895 PANTHER POTASSIUM CHANNEL AKT1 14 894 IPR045319 GO:0005249|GO:0006813
Lja1g3850 895 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 14 894 - -
Lja1g3850 895 Gene3D - 545 730 IPR036770 -
Lja1g3850 895 Pfam KHA, dimerisation domain of potassium ion channel 830 891 IPR021789 -
Lja1g3850 895 SUPERFAMILY cAMP-binding domain-like 323 518 IPR018490 -
Lja1g3850 895 SMART ANK_2a 611 640 IPR002110 GO:0005515
Lja1g3850 895 SMART ANK_2a 543 572 IPR002110 GO:0005515
Lja1g3850 895 SMART ANK_2a 578 607 IPR002110 GO:0005515
Lja1g3850 895 SMART ANK_2a 675 704 IPR002110 GO:0005515
Lja1g3850 895 Pfam Ankyrin repeats (3 copies) 550 641 IPR002110 GO:0005515
Lja1g3850 895 Pfam Ankyrin repeats (3 copies) 650 724 IPR002110 GO:0005515
Lja1g3850 895 ProSiteProfiles KHA domain profile. 830 895 IPR021789 -
Lja1g3850 895 SUPERFAMILY Ankyrin repeat 549 732 IPR036770 -
Lja1g3850 895 ProSiteProfiles Ankyrin repeat profile. 611 643 IPR002110 GO:0005515
Lja1g3850 895 SMART cnmp_10 398 515 IPR000595 -
Lja1g3850 895 Pfam Cyclic nucleotide-binding domain 418 502 IPR000595 -
Lja1g3850 895 ProSiteProfiles Ankyrin repeat region circular profile. 611 642 - -
Lja1g3850 895 CDD CAP_ED 398 503 IPR000595 -
Lja1g3850 895 Gene3D Jelly Rolls 366 525 IPR014710 -
Lja1g3850 895 SUPERFAMILY Voltage-gated potassium channels 77 319 - -
Lja1g3850 895 ProSiteProfiles Ankyrin repeat region circular profile. 578 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3850 Lja-Chr1 48637528 48645124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3850 7 892 Ion Channels AT4G32500 55.556 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3850 K21867 - gmx:100786870 1159.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3850 1 48637528 48645124 Lja1g3850 1 48637528 48645124 ECH
Lja5g2831 5 55782927 55790049 Lja1g3850 1 48637528 48645124 PCT