Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3842 ATGGAAGAAAGTGAAGGTGTGAATTGTTTTAGTGAAAGCAGAAGCTCCAGTGAGAGTCGACCTCCGAATCCAAATCCCAATCCTTCGATTGCTTCTGCTTATCGCCAATGCCAGCGTTCTGACCCTGCGGTTTTGCATTGCAGGAAATCGCTTGTTCGCCATGCTTCTCTTACAACAATCAAGCTTTCTGAGGTATGCTCTGAGCCAGGGAATGTTACTGAAGATTGTCAGTCTGATTTCCTTCCAAAGCTTCGTTCTGGAGGATGTGCTGATATGGGGTTCCGGTCAAGTATGGAAGACGTATATGTTTGTGTTGACAACTTTATGCAGGACCAACTGCTCAAGAGCCATATTGATGGGCCCAGTGCATTCTATGGGGTGTTTGATGGACATGGTGGAAAGCATGCTGCTGACTTTGCTTGTCATCATTTGCCAAAGTTCATTCTTGAGGATGAAGGTTTCCCAAGAGATATTGAAAGGATTATTGCTTCTGCCTTTATGCAAACCGACAATGCCTTTGCAGAAGCATGTTCTCTGGATGCTGCCCTTGCATCTGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTTGCTAGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGTCGTCGAGGAAAAGCAATTGAAATGTCAAGAGATCATAAACCAATCTGCAGCAAAGAAAAGAAGCGTATTGAGGGATCTGGTGGCTATGTCTATGATGGATATCTTAATGGGCAACTTAATGTTGCTCGTGCTATTGGTGACTGGCACATGGAAGGAATGAAAAGCAAAGATGGTGGACCACTCAGTGCAGAACCTGAACTCATGACTACCAAACTCACTGCTGAGGATGAATTTCTCATCATAGGTTGTGATGGGATTTGGGATGTATTTAGGAGCCAAAATGCTGTCGATTTTGCTCGGCGCAGGCTTCAGGAGCACAACGACCCAGCCTTGTGCAGTAAGGATCTGATTGATGAGGCATTAAAGAGAAAGAGCGGAGACAATTTATCTGCTGTTGTGGTTTGCTTCCATCAACAGCCACCACCTAACTTGGTCGCACCACGCTCTAGGGTGCACCGGAGCTTCTCTGCTGAAGGTTTGAAGGAGTTGCAAAGCTTCCTGGACAGCTTGGGTAATTGA 1155 0.4615 MEESEGVNCFSESRSSSESRPPNPNPNPSIASAYRQCQRSDPAVLHCRKSLVRHASLTTIKLSEVCSEPGNVTEDCQSDFLPKLRSGGCADMGFRSSMEDVYVCVDNFMQDQLLKSHIDGPSAFYGVFDGHGGKHAADFACHHLPKFILEDEGFPRDIERIIASAFMQTDNAFAEACSLDAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIEMSRDHKPICSKEKKRIEGSGGYVYDGYLNGQLNVARAIGDWHMEGMKSKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPALCSKDLIDEALKRKSGDNLSAVVVCFHQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLGN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3842 384 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g3842 384 PANTHER PROTEIN PHOSPHATASE 2C 57 370 IPR015655 GO:0004722|GO:0006470
Lja1g3842 384 CDD PP2Cc 85 348 IPR001932 -
Lja1g3842 384 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 57 370 - -
Lja1g3842 384 SUPERFAMILY PP2C-like 79 350 IPR036457 -
Lja1g3842 384 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Lja1g3842 384 SMART PP2C_4 75 346 IPR001932 -
Lja1g3842 384 Pfam Protein phosphatase 2C 86 340 IPR001932 -
Lja1g3842 384 Gene3D - 62 352 IPR036457 -
Lja1g3842 384 ProSiteProfiles PPM-type phosphatase domain profile. 85 348 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3842 Lja-Chr1 48576570 48579501 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3842 1 384 PP2C-type Phosphatase Gene Family AT2G25620 65.561 0.0 523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3842 K14803 - gmx:100815725 632.098