Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3839 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTAGTTAAGAGGGATTTGAAGGCTACTGCTCAAGCTTTTCAATCTGAAGGAAAAGTATCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTCCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCGGAGGTCGCCGCATCTTATATCGAGACACAGTTAATGAAGACAAGGGAGCAACAGCAGCAGCAGCAGCAACAACAACAACAACAGCAGCAGCAACAGCAGCAGTCTCAACCCCAGCAATCACCGCATCAACAGCAGCAGCAGCAGCAACACATGCAGATGCAACAGATCCTGTTGCAGAGGCATGCAGCTCTCCAGCAACAGCAACAGCAACAACAACAGCAGCAACAGCAGCAGCAGCAGCAGCAATCACAGCAACAACAGCCACAATCACAACAGCAAAGTAGGGATAGAGCACATCTCTTAAATGGTAGTGCAAATGGGTTAGTTGGAAACTCTGGAACTGCAAATGCACTTGCAACTAAAATGTATGAGGAGAGGTTAAAACTTCCCCTCCAGAGGGATTCTTTGGATGAGGCAGCAATGAAGCAAAGATTTGGCGAGAATATGGGTCAACTCATAGACCCAAACCATGCCTCAATATTGAAGTCAGCTGCAGCTAGTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCCGGTGGGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACACTGGATATAAAGAGTGAGATAAACCCCGTTTTAAATCCCAGAGCCGCTGGTCCTGAAGGATCATTGTTAGCAATTCCTGGATCGAATCAAGGTAGCAACAATTTGACTCTGAAAGGGTGGCCGCTCACAGGTCTGGAGCAACTGCGCTCTGGTATACTCCAGCAGCAAAAACCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAACTTATGCTTGCTCAACAAAATTTGGCATCACCATCTGCCAGTGATGAAAGCAGAAGACTAAGAATGCTATTGAATAATAGGGGTATTGGCCTAAACAAGGATGGTCTTTCTAATCCTGTTGGTGATGTGTCGTCGAATGTTGGATCACCTCTTCAAGGCGGTGGACCTCCTTTTCCTCGTGGGGATACAGATATGTTAATGAAGTTGAAACTGGCTCAGTTACAGCAGCAGCAGCAACATCAACAACAGCCAAGCAGCAATGCACAGCAGCAGCAACTTCAACAGCATGCTCTCTCGAACCCGCAATCTCAGACTTCAAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGATCAGGTTTCAAAAAACCAGATGGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACAACAGGCCCATCCCCAAGTTCAGCACCCTCAACTCCCTCAACCCATACGCCTGGGGATGTGATATCAATGCCTGCCATGCCCCATAATAGTAGTTCCTCAAAGCCTCTAATGATGTTTGGCTCTGAAGGCCCCGGAACACTTACATCTTCTTCAAACCAGTTGGCTGACGTGGATCGCTTTGTGGAGGATGGATCACTAGATGAAAATGTGGAGGAATTTTTATCCCACCATGATGATACAGACCCTAGAGATACTGTTGGTCGCTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATATAAATTCTGTACGTGCAAGCACAAGTAAAGTTGTCTGTTGCCATTTCTCATCTGATGGCAAATTGCTCGCAAGTGGTGGCCATGATAAAAAGGCTGTTTTATGGTATACGGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCAGCTTTGATCACTGATGTCCGTTTCAGCCCCAGCATGCCGCGTCTGGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGATGTTGATAATCCTGGGTATTCACTTCGCACCTTTACGGGACATTCTGCATCTGTTATGTCACTAGATTTTCATCCAAATAAAGAGGACCTTATCTGCTCTTGTGATAGTGATGGTGAAATACGATATTGGAGCATAAACAATGGCAGTTGTGCTAGAGTCTCCAAGGGTGGCACTACCAAGATGAGATTTCAACCTCGGCTAGGGAGGTATCTTGCTGCAGCTGCAGAGAACATCGTGTCTATACTGGACGTGGAGACTCAGGCATGCCGATATTCATTAAAGGGACACACAAAGACAATAGATTCTGTATGTTGGGATCCATCTGGAGAGTTACTAGCATCTGTGAGCGAGGACTCTGTCAGGGTCTGGAACCTTGGAACAGGGACTGATGGGGAATGTGTTCATGAGCTTAGCTGTAATGGCAGTAAATTTCACTCGTGTGTTTTCCACCCAACGTACCCTTCATTACTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGGCTGAGAACAAGACAATGACTCTATCTGCTCATGATGGACTAATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTTATCAAGCTCTGGAAGTGA 2709 0.4603 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQSEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKTREQQQQQQQQQQQQQQQQQQSQPQQSPHQQQQQQQHMQMQQILLQRHAALQQQQQQQQQQQQQQQQQQSQQQQPQSQQQSRDRAHLLNGSANGLVGNSGTANALATKMYEERLKLPLQRDSLDEAAMKQRFGENMGQLIDPNHASILKSAAASGQPSGQVLHGAAGGMSPQVQARSQQLPGSTLDIKSEINPVLNPRAAGPEGSLLAIPGSNQGSNNLTLKGWPLTGLEQLRSGILQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASDESRRLRMLLNNRGIGLNKDGLSNPVGDVSSNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQQQHQQQPSSNAQQQQLQQHALSNPQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSFRGNDQVSKNQMGRKRKQPVSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPAMPHNSSSSKPLMMFGSEGPGTLTSSSNQLADVDRFVEDGSLDENVEEFLSHHDDTDPRDTVGRCMDVSKGFTFSDINSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSALITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDSDGEIRYWSINNGSCARVSKGGTTKMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDSVCWDPSGELLASVSEDSVRVWNLGTGTDGECVHELSCNGSKFHSCVFHPTYPSLLVIGCYQSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK* 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 703 745 IPR001680 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 785 817 IPR001680 GO:0005515
Lja1g3839 902 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 902 IPR044716 GO:0003714
Lja1g3839 902 Coils Coil 83 107 - -
Lja1g3839 902 MobiDBLite consensus disorder prediction 418 461 - -
Lja1g3839 902 SMART WD40_4 822 861 IPR001680 GO:0005515
Lja1g3839 902 SMART WD40_4 696 736 IPR001680 GO:0005515
Lja1g3839 902 SMART WD40_4 778 816 IPR001680 GO:0005515
Lja1g3839 902 SMART WD40_4 863 902 IPR001680 GO:0005515
Lja1g3839 902 SMART WD40_4 653 692 IPR001680 GO:0005515
Lja1g3839 902 SMART WD40_4 611 650 IPR001680 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 870 902 IPR001680 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 785 817 - -
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 703 741 - -
Lja1g3839 902 Gene3D - 752 902 IPR015943 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 870 902 - -
Lja1g3839 902 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 660 695 IPR001680 GO:0005515
Lja1g3839 902 Pfam LisH 10 36 IPR006594 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 660 695 - -
Lja1g3839 902 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 902 - -
Lja1g3839 902 ProSitePatterns Trp-Asp (WD) repeats signature. 679 693 IPR019775 -
Lja1g3839 902 SUPERFAMILY WD40 repeat-like 615 902 IPR036322 GO:0005515
Lja1g3839 902 Pfam WD domain, G-beta repeat 620 649 IPR001680 GO:0005515
Lja1g3839 902 Pfam WD domain, G-beta repeat 657 692 IPR001680 GO:0005515
Lja1g3839 902 Pfam WD domain, G-beta repeat 865 902 IPR001680 GO:0005515
Lja1g3839 902 Pfam WD domain, G-beta repeat 699 736 IPR001680 GO:0005515
Lja1g3839 902 Pfam WD domain, G-beta repeat 781 816 IPR001680 GO:0005515
Lja1g3839 902 ProSiteProfiles Trp-Asp (WD) repeats profile. 618 659 IPR001680 GO:0005515
Lja1g3839 902 MobiDBLite consensus disorder prediction 378 552 - -
Lja1g3839 902 MobiDBLite consensus disorder prediction 100 124 - -
Lja1g3839 902 Coils Coil 133 159 - -
Lja1g3839 902 MobiDBLite consensus disorder prediction 472 532 - -
Lja1g3839 902 Gene3D - 594 751 IPR015943 GO:0005515
Lja1g3839 902 SMART Lish 8 40 IPR006594 GO:0005515
Lja1g3839 902 CDD WD40 615 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3839 Lja-Chr1 48471397 48480747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3839 697 901 Miscellaneous Gene Families AT5G08390 24.286 3.21e-12 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Lja1g3839 WD40 0.0031 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3839 - - pvu:PHAVU_009G096600g 1439.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3839 1 48471397 48480747 Lja1g3839 1 48471397 48480747 ECH
Lja5g2820 5 55539900 55560287 Lja1g3839 1 48471397 48480747 PCT