Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3834 ATGAATAAAGGAAATGCATCTTGTGCCAAAGAGGAAGAGCATCCACTCCGAATCACGAGGGCGAGGGCTAGAGCCTTGGGAGGGATTCCTCCCTACTCAAGACCGTCCTTTAAGAATGACCACAAGAAAGCAAGTTCCAAAAGAGCAGCTTCTGTTAACAAAGCTTGTGCGGTGGTTCCTGATGCTCGTCAGCAGAAGAGAAAGGCAGTGCTCACAGATGTAACCAACATCAGCAAAAAGCCACATGATATGTGTATTCAAGCACCAAAATTTCAAGGAAGGGGAGTTTACAAGAAGAAAAACACAAAGCTAGCTTCAAATGTCTCCATTGAAGCTTCATCATCACAAGAGCATGTTAAACCAAAGTTAGCAGAAGAATCATCCACAATAAAGATGGTAGAGTCAGCCGGCTCATTTGCAGAAGCAACTTTAGATGGCAAAGAGCCAGCAGACAATTGTTTGTCCAACAACATTAAAGAACATGTTATAGCAGGCTCCACACTTACAATGCAAGAATCTATGCAATCTGATGAACTCCTTAGCTCTCCAAACACAGATATGGATATAAATTGTGAGAATCCAGGAGCCTCAGATATCCCAGCCATTGTGGATATTGATTCAGAGTTAATAGACCCTCTAGTTTGGAGCTCCTATGCCCCTGACATATACAACATTACTCGAGTCAGAGAGCTTGAAAGGAGACCATTAACCAACTACATGGATGAGTTACAGAAAGATATTTGTCCAAGCATGCGTGGAATTCTGATTGATTGGCTTGTTGAGGTTTCTGAGGAATATAAGCTGGTTCCAGACACTCTTTACCTGACAGTGAACCTCATCGATCGGTTTCTCTCAACAAGATTGATTCAGAAACAAAGGCTCCAGCTTCTTGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTAGAGGAGTTTTGCTTCATCACAGACAATACATACACAAGGGAAGAGGTATTGAAGATGGAGAGTGAAGTTCTAACACTTTTGCAATTTCAGTTATCTTTCCCCACAACTAAAACATTTCTCAGGAGATTCATCCAAGCTGCACAAACTTCTTACAAGGCCCCTCGTGTTGAACTGGAATTCCTAGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAGTACAGCTTCTTGGAATTTCTACCTTCCATGGTGGCTGCTTCTGCTGTATTCCTTGCAAAATGGACCCTCGACCATTTAGAACATCCATGGAATCCAACTCTGGAGCATTATACAAACTACAAATCTTCAGAGCTCAAAACTGTTGTTCTTGCACTCCAAGATCTTCAACTTAATACCAAAGGCTGTCCACTGAATGCTATACGTGAGAAATATAAACACCAGAAGTTCAATTGTGTGGCAAATCTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGTTCAAGTGTAA 1452 0.4201 MNKGNASCAKEEEHPLRITRARARALGGIPPYSRPSFKNDHKKASSKRAASVNKACAVVPDARQQKRKAVLTDVTNISKKPHDMCIQAPKFQGRGVYKKKNTKLASNVSIEASSSQEHVKPKLAEESSTIKMVESAGSFAEATLDGKEPADNCLSNNIKEHVIAGSTLTMQESMQSDELLSSPNTDMDINCENPGASDIPAIVDIDSELIDPLVWSSYAPDIYNITRVRELERRPLTNYMDELQKDICPSMRGILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTREEVLKMESEVLTLLQFQLSFPTTKTFLRRFIQAAQTSYKAPRVELEFLANYLAELALVEYSFLEFLPSMVAASAVFLAKWTLDHLEHPWNPTLEHYTNYKSSELKTVVLALQDLQLNTKGCPLNAIREKYKHQKFNCVANLSPKPVQSLFQVQV* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3834 483 CDD CYCLIN 350 440 IPR013763 -
Lja1g3834 483 Gene3D - 221 469 - -
Lja1g3834 483 Pfam Cyclin, N-terminal domain 221 348 IPR006671 -
Lja1g3834 483 ProSitePatterns Cyclins signature. 252 283 IPR006671 -
Lja1g3834 483 MobiDBLite consensus disorder prediction 24 48 - -
Lja1g3834 483 CDD CYCLIN 251 340 IPR013763 -
Lja1g3834 483 PANTHER CYCLIN-A2-4 47 479 - -
Lja1g3834 483 SMART cyclin_7 354 442 IPR013763 -
Lja1g3834 483 SMART cyclin_7 257 341 IPR013763 -
Lja1g3834 483 Gene3D - 235 348 - -
Lja1g3834 483 PIRSF Cyclin_A_B_D_E 32 482 IPR039361 -
Lja1g3834 483 Pfam Cyclin, C-terminal domain 350 472 IPR004367 -
Lja1g3834 483 SMART Cyclin_C_2 350 473 IPR004367 -
Lja1g3834 483 SUPERFAMILY Cyclin-like 211 347 IPR036915 -
Lja1g3834 483 SUPERFAMILY Cyclin-like 349 472 IPR036915 -
Lja1g3834 483 PANTHER CYCLINS 47 479 IPR039361 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3834 Lja-Chr1 48389493 48395346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3834 7 479 Core Cell Cycle Gene Families AT5G25380 51.363 7.91e-147 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3834 K06627 - gmx:547780 669.077