Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3832 ATGGATGTTTTGTTTTCACCTCAACTGTGTCCTGAAGGTTCTTCTTCTTCTTCTTCCGACACTGACCCTTTGTTAATGGCGCGACCAACTCACCATGTGATTGACATAACCCCCAATTCTCAAGCTTCTACTTCTGCTGCTGATTCCTCTGTTGCCCATGATTTTGGTGGTTCTAGATTGGTTGTTTCTTCTTCTGGGCCTTCAAATGGGTCCAATTCTAGGATGAGAGTGAGGCATGGAGAACAAAGGACGATTAGGAGTCCGTTGAATTCAGGGCTTTGGGTATCGCTTGAGGCTGCCTTGACACTCAGCCAGATTGTTGCTTCTGTTGTTGTTTTGTCGTTGTCGAGGCATGAGCATACGCGTGCTCCGTTGTTTGCTTGGATTGTGGGTTATGCTTCAGGGTGTGTTGCTACCCTTCCTCTACTTTTGTGGCGCTATTGTTATAATAACTGTGTAAGGGAGCTGGATTCATCTCAAGCTTCTCCTAGGATTCATGATACTTCAGGGACACTTCTTTCCAGTTCAAGGACAGATGGAGGAGAAGAGGATTGGTCTGCTGCTGCTGCAGCATCCCACAGAAGCAACCTAGCTTCGTGGCTGATGAATCCGAGCAGGCTGAAGCTACTTATGGAATACTTCAAAATTTCGGTAGATTGCTTTTTTGCAATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCTAGTGAAGCTCCAAACATGTACAGGTTATGTGTAGTGTTTCTTACTTTAAGCTGTATCGGTTATGCTATGCCATTCATTCTATGTGCAACAATCTGCTGCTGTCTTCCTTGTTTAGTTTCCGTCCTTGGGATTAGAGAGGTTCTGACAGAAACCCATGGTGCAACCTCTGAAACCATTAATGCTTTACCAACTTACAAGTTCAAAATGAAGAAAAAGAAAACCACGGATGAAAGCAACTCAGCTGTTAGTGAAGGTGGAATTGTGGCTAAAGGAACTGAAAAGGAACGAATGGTCTCTAAAGAAGATGCAGTTTGCTGCATCTGCTTGGCGACGTATGAAAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCATTTTTTCCACAAAGACTGTGTAGACAAGTGGTTAAAGATAAATGCATCATGTCCCCTTTGCAAGAGTGAGATTGGTGAGAATGTAACAGGAACAGTCTCTGGAGAACATGCCACCCAACAATAG 1218 0.4368 MDVLFSPQLCPEGSSSSSSDTDPLLMARPTHHVIDITPNSQASTSAADSSVAHDFGGSRLVVSSSGPSNGSNSRMRVRHGEQRTIRSPLNSGLWVSLEAALTLSQIVASVVVLSLSRHEHTRAPLFAWIVGYASGCVATLPLLLWRYCYNNCVRELDSSQASPRIHDTSGTLLSSSRTDGGEEDWSAAAAASHRSNLASWLMNPSRLKLLMEYFKISVDCFFAIWFVVGNVWIFGGHSSASEAPNMYRLCVVFLTLSCIGYAMPFILCATICCCLPCLVSVLGIREVLTETHGATSETINALPTYKFKMKKKKTTDESNSAVSEGGIVAKGTEKERMVSKEDAVCCICLATYENNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEIGENVTGTVSGEHATQQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3832 405 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 31 405 - -
Lja1g3832 405 MobiDBLite consensus disorder prediction 1 25 - -
Lja1g3832 405 MobiDBLite consensus disorder prediction 9 24 - -
Lja1g3832 405 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 31 405 - -
Lja1g3832 405 Pfam Ring finger domain 345 386 IPR001841 -
Lja1g3832 405 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Lja1g3832 405 SUPERFAMILY RING/U-box 337 392 - -
Lja1g3832 405 MobiDBLite consensus disorder prediction 62 81 - -
Lja1g3832 405 CDD RING-H2_RNF111_like 344 386 - -
Lja1g3832 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 392 IPR013083 -
Lja1g3832 405 SMART ring_2 345 385 IPR001841 -
Lja1g3832 405 SMART ringv_2 344 386 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3832 Lja-Chr1 48357686 48361835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3832 19 391 C3H Transcription Factor Family AT1G80400 49.745 2.48e-134 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3832 - - lja:Lj1g3v1931330.1 783.097