Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3830 ATGGGTGTGGATTACTACCATACATTGAATGTGGAAAGAAATGCAACAGAGGATGATCTAAAGAAAGCATATAGAAAGTTGGCCATGAAATGGCACCCTGACAAGAACCCCACCAACAAAAAAGAAGCTGAAGCCAATTTCAAGCAGATTTCTGAGGCCTATGATGTATTGAGTGATCCTCAGAAGAGGGCAATTTATGATCAGCATGGAGAGGAAGGGTTGAAAGATAGGCCACCACCTGGGCATGAAAATACAAATGGATTTAATCCCAGAAATGCAGAAGACATTTTTGCAGAATTCTTTGGAAGTAGTCCTTTTGGATTTGGATCATCAGGACCAGGGAGGTCCAAGAGATTCCCTTCTGATGGAGGGGGGGCATTTAGTGGATTCAATGGAAGTGACAACATTTTTAGAACATATAGTGAAAGGGGGAACATGCCAAAGAAGCCACCACCCGTAGAGACCAAATTGCCTTGCAGGTTGGAGGAGTTGTATTCTGGATCCACAAGGAAAATGAAGATCTCAAGGACTGTAATGGATGCCAAAGGAAGATCGATTCCAGAAACAGAGATATTAACCATTGAAGTGAAGCCAGGTTGGAAGAAAGGGACCAAGATTACATTCCCAGACAAAGGGAATCAGCAAGCAAATCAACTGCCAGCAGACCTTGTGTTTGTGATTGATGAGAAGCCTCATGAGTTCTTCAAGAGAGATGGGAATGACCTCATTGTGAGCCAAAGGGTGTCACTAGCAGAAGCCATTGGAGGAACTGTACTAAATCTCACAACACTTGATAAACGAAGCTTGCGTGTGCCTGTGAATGAAATTGTTAGCCCTGGTTATGAGCTGGTTGTTGCAAATGAAGGAATGCCAATAACAAAGGAGCGTGGTTATAAGGGTGATTTGAGGATCATATTTGAGGTTAAGTTCCCTACAAGATTGACGCCAGAACAAAGAGCTGGACTAAAGAGAGCATTGGGAGGCTGA 987 0.4326 MGVDYYHTLNVERNATEDDLKKAYRKLAMKWHPDKNPTNKKEAEANFKQISEAYDVLSDPQKRAIYDQHGEEGLKDRPPPGHENTNGFNPRNAEDIFAEFFGSSPFGFGSSGPGRSKRFPSDGGGAFSGFNGSDNIFRTYSERGNMPKKPPPVETKLPCRLEELYSGSTRKMKISRTVMDAKGRSIPETEILTIEVKPGWKKGTKITFPDKGNQQANQLPADLVFVIDEKPHEFFKRDGNDLIVSQRVSLAEAIGGTVLNLTTLDKRSLRVPVNEIVSPGYELVVANEGMPITKERGYKGDLRIIFEVKFPTRLTPEQRAGLKRALGG* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3830 328 PRINTS DnaJ domain signature 24 39 IPR001623 -
Lja1g3830 328 PRINTS DnaJ domain signature 42 62 IPR001623 -
Lja1g3830 328 PRINTS DnaJ domain signature 6 24 IPR001623 -
Lja1g3830 328 PRINTS DnaJ domain signature 62 81 IPR001623 -
Lja1g3830 328 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Lja1g3830 328 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 328 - -
Lja1g3830 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 152 233 IPR008971 GO:0006457|GO:0051082
Lja1g3830 328 CDD DnaJ 4 59 IPR001623 -
Lja1g3830 328 PANTHER DNAJ HEAT SHOCK FAMILY PROTEIN 1 328 - -
Lja1g3830 328 Gene3D - 152 230 - -
Lja1g3830 328 Gene3D DnaJ domain 3 111 IPR036869 -
Lja1g3830 328 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Lja1g3830 328 SUPERFAMILY HSP40/DnaJ peptide-binding domain 234 320 IPR008971 GO:0006457|GO:0051082
Lja1g3830 328 SUPERFAMILY Chaperone J-domain 3 110 IPR036869 -
Lja1g3830 328 CDD DnaJ_C 151 314 - -
Lja1g3830 328 SMART dnaj_3 3 62 IPR001623 -
Lja1g3830 328 Pfam DnaJ domain 4 67 IPR001623 -
Lja1g3830 328 Gene3D - 231 327 - -
Lja1g3830 328 MobiDBLite consensus disorder prediction 70 89 - -
Lja1g3830 328 Pfam DnaJ C terminal domain 153 311 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3830 Lja-Chr1 48346366 48348246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3830 5 114 C2H2 Transcription Factor Family AT1G74250 33.913 1.08e-10 60.8