Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3826 ATGAAATCGGCACAGTCCTCATTCCGAGATCGGACACACGAATTCCAAAACATTGCAGAGAGGTTGAAGAAATCAGGATCTGGACCCAATGGACCTGCCACCACCACCACCGCCACCGCCTCCTCATCCAGATCGGAGGAACACCGTTCCGCTGTTGCTATGCAATCAGAATTCAACAAAAGAGCTTCCAAAATCGGCTACGGGATTCACCAAACCTCTCAGAAGCTCTCCAAGCTCGCAAAACTGGCGAAACGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATCAAGCAAGATATTACTGCGCTGAACTCTGCGGTTGTTGATCTTCAATTGGTTAGCAATTCTAGGAATGAGAGTGGAAACGCTTCGGCCGACACGACTAGCCATTCGTTCACGGTGGTGGATGACCTCAAGACGCGGTTGATGAGCACCACCAAGGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACTTGAAAGTACATGAGAATAGAAGACAACTGTTTTCGTCCTCTGCTTCCAAGGAATCTGCAAATCCTTTCGTCCGTCAGCGGCCGTTAGCTACGAGAACGGCTGCTAGTGAATCTAATGCTCCTGCACCCCCATGGGCTAGTGGGCTGGGGTCCTCGTCGTCTTCTCAGTTGTTTCCTAAGAAGCAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAACAACAACAGCAACAGCAGCAGCAGTTAGTCCCACTGCAAGACAGTTACATGCAAAGCAGAGCTGAGGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAAGGGGCACAAGGTGCTTTGTTGAAGTATATGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTACGGTTTTCTTATTTTTTGTGGCATAA 1038 0.4634 MKSAQSSFRDRTHEFQNIAERLKKSGSGPNGPATTTTATASSSRSEEHRSAVAMQSEFNKRASKIGYGIHQTSQKLSKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNASADTTSHSFTVVDDLKTRLMSTTKEFKDVLTMRTENLKVHENRRQLFSSSASKESANPFVRQRPLATRTAASESNAPAPPWASGLGSSSSSQLFPKKQVDGESQPLLQQQQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYMNSISSNRWLMIKIFFVLIFFLTVFLFFVA* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3826 345 ProSitePatterns Syntaxin / epimorphin family signature. 259 298 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lja1g3826 345 SUPERFAMILY t-snare proteins 55 308 IPR010989 GO:0016020|GO:0016192
Lja1g3826 345 MobiDBLite consensus disorder prediction 28 49 - -
Lja1g3826 345 MobiDBLite consensus disorder prediction 1 20 - -
Lja1g3826 345 MobiDBLite consensus disorder prediction 196 243 - -
Lja1g3826 345 Pfam SNARE domain 290 341 IPR000727 -
Lja1g3826 345 CDD SNARE_syntaxin5 256 334 - -
Lja1g3826 345 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 5 24 IPR021538 -
Lja1g3826 345 SMART tSNARE_6 248 315 IPR000727 -
Lja1g3826 345 PANTHER SYNTAXIN 6 344 IPR045242 -
Lja1g3826 345 MobiDBLite consensus disorder prediction 1 49 - -
Lja1g3826 345 Gene3D - 52 308 - -
Lja1g3826 345 PANTHER SYNTAXIN-32-LIKE 6 344 - -
Lja1g3826 345 MobiDBLite consensus disorder prediction 197 243 - -
Lja1g3826 345 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 253 315 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3826 Lja-Chr1 48305423 48310423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3826 2 345 SNARE and Associated Proteins AT3G24350 66.116 4.35e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3826 K08490 - gmx:100810956 496.508