Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja1g3825 | ATGCACGTCAAATCGGCGCAGTCATCGTATCGGGATCGGACGCACGAATTCCACAGCATCACAGAGAGGTTGAAGAAATCAGGATCTGGACCCAATGGACCTGCCACCACCACCACCACCTCATCCAGATCGGAGGAACCCCGTTCTGCCATTGCTATGCAATCAGAATTCAACAAAAGAGCCTCCAAAATCGGTTACGGCATTCACCAAACCTCTCAGAAGCTCGCCAAGCTCGCAAAATTGGCGAAAAGGACTTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATTAAGCAGGATATTACTGCGCTAAACTCCGCGGTTGTTGATCTTCAGTTACTCAGCAATTCTAGGAATGAGAGTGGAAATGCTTCTGCCGACACGACTAGTCATTCCACCACGGTTGTAGATGACCTCAAGACGCGGTTGATGGGTGCCACGAAGGAGTTTAAAGATGTTCTCACCATGAGAACTGAGAACATGAAAGTACACGAGAGTAGGAGACAATTGTTTTCGGCCTCTGCCTCGAAAGATTCTGCTAACCCTTTTGTCCGTCAGCGACCTTTAGCTACGAGGTCCGCTGCTAGTTCTTCTGATGCCCCTGCACCTCCATGGGCTAGTGGTTCGCAATCTTCATCCCAGTTGTTTCCTAAGAAGCAAGTGGATGGGGAGAGTCAACCATTGTTGCAACAGCAGCAACAACAACAGCAACAGCAGCAACAGATAGTTCCTTTACAAGACAGTTACATGCAAAGCAGAGCAGAAGCACTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATTTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAGGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTGGAGGGGGCGCAAGGTGCTTTGTTGAAGTATCTGAACAGCATATCTTCTAATAGGTGGCTCATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTATGGTTTTCTTATTTTTTGTGGCATAG | 1035 | 0.4599 | MHVKSAQSSYRDRTHEFHSITERLKKSGSGPNGPATTTTTSSRSEEPRSAIAMQSEFNKRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLLSNSRNESGNASADTTSHSTTVVDDLKTRLMGATKEFKDVLTMRTENMKVHESRRQLFSASASKDSANPFVRQRPLATRSAASSSDAPAPPWASGSQSSSQLFPKKQVDGESQPLLQQQQQQQQQQQQIVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA* | 345 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja1g3825 | 344 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 252 | 314 | IPR000727 | - | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 169 | 240 | - | - | |
| Lja1g3825 | 344 | PANTHER | SYNTAXIN | 2 | 343 | IPR045242 | - | |
| Lja1g3825 | 344 | PANTHER | SYNTAXIN-32-LIKE | 2 | 343 | - | - | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 172 | 186 | - | - | |
| Lja1g3825 | 344 | Pfam | SNARE domain | 289 | 340 | IPR000727 | - | |
| Lja1g3825 | 344 | Gene3D | - | 52 | 307 | - | - | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Lja1g3825 | 344 | SMART | tSNARE_6 | 247 | 314 | IPR000727 | - | |
| Lja1g3825 | 344 | SUPERFAMILY | t-snare proteins | 54 | 307 | IPR010989 | GO:0016020|GO:0016192 | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 30 | 51 | - | - | |
| Lja1g3825 | 344 | CDD | SNARE_syntaxin5 | 255 | 333 | - | - | |
| Lja1g3825 | 344 | MobiDBLite | consensus disorder prediction | 195 | 240 | - | - | |
| Lja1g3825 | 344 | Pfam | Syntaxin-5 N-terminal, Sly1p-binding domain | 8 | 26 | IPR021538 | - | |
| Lja1g3825 | 344 | ProSitePatterns | Syntaxin / epimorphin family signature. | 258 | 297 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja1g3825 | Lja-Chr1 | 48298744 | 48303051 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lja1g3825 | 1 | 344 | SNARE and Associated Proteins | AT3G24350 | 66.391 | 6.40e-148 | 419 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja1g3825 | K08490 | - | gmx:100811494 | 510.375 |