Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3820 ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCACTGCAGTTTGAGTGCAATGACATGAACCATATTACTGAGAAAGATGTTTGTAATCAACAATCAAATGAAGAGGACAGAGAGATCAATGACTTGAGGGACAGAGGATATATGGAACATGGATGTCAACATTACCGGAGGAGATGTCGAATTAGGGCCCCCTGTTGCAATGAGATATTTGATTGTCGCCATTGTCACAATGAGGCAAAAAATGATATCAACATTGATCAGAAGTATAGACACGACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTGTCGGACAGAACAAGAGGTTCAGCAGAACTGTATCAACTGTGGTGTTTGCATGGGCAAGTACTTCTGTGCGACATGTAAACTCTTTGATGATGATGTGTCTAAGCAGCAGTACCATTGCAGTGGCTGCGGAATTTGCAGGACTGGAGGCAGCGAAAATTTCTTCCACTGCTACAAGTGTGGTTGTTGTTACTCAACTCAGCTGAAAGAGAGTCACCTTTGTGTGGAAGGGGCGATGCATCACAACTGCCCCGTTTGTTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTATGCTCTGTGGACACACAATCCATAAAAGCTGCCTGAACGAAATGAGGGAGCATTTCCAGTACGCGTGTCCTCTGTGCTCTAAATCAGTTTGTGACATGTCAAAGGTTTGGGAGAAATTGGACTTGGAGATTGCTGCTACACCAATGCCTGAACCATACCTGAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAACTTCTCAAGTCCGGTTCCATCTTGTTGCTCAAAAGTGCATGAACTGCAAATCCTACAACACACGCCAAACAAGAGGCTGA 894 0.4385 MGEVAVMHSEPLQFECNDMNHITEKDVCNQQSNEEDREINDLRDRGYMEHGCQHYRRRCRIRAPCCNEIFDCRHCHNEAKNDINIDQKYRHDIPRHQVKQVICSLCRTEQEVQQNCINCGVCMGKYFCATCKLFDDDVSKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTQLKESHLCVEGAMHHNCPVCFEYLFESVNDVTVMLCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSKVWEKLDLEIAATPMPEPYLNKMVWILCNDCGKTSQVRFHLVAQKCMNCKSYNTRQTRG* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3820 297 Coils Coil 25 45 - -
Lja1g3820 297 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 297 - -
Lja1g3820 297 Pfam CHY zinc finger 52 133 IPR008913 GO:0008270
Lja1g3820 297 SUPERFAMILY CHY zinc finger-like 49 123 IPR037274 GO:0008270
Lja1g3820 297 ProSiteProfiles Zinc finger CHY-type profile. 45 121 IPR008913 GO:0008270
Lja1g3820 297 Gene3D - 259 297 - -
Lja1g3820 297 ProSiteProfiles Zinc finger RING-type profile. 188 231 IPR001841 -
Lja1g3820 297 ProSiteProfiles Zinc finger CTCHY-type profile. 123 187 IPR017921 -
Lja1g3820 297 SMART ring_2 188 230 IPR001841 -
Lja1g3820 297 SUPERFAMILY RING/U-box 186 235 - -
Lja1g3820 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 249 IPR013083 -
Lja1g3820 297 Pfam Zinc-ribbon 235 293 IPR039512 -
Lja1g3820 297 SUPERFAMILY Zinc hairpin stack 124 181 IPR037275 -
Lja1g3820 297 Pfam Ring finger domain 187 230 IPR001841 -
Lja1g3820 297 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 21 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3820 Lja-Chr1 48227096 48233607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3820 42 297 C2H2 Transcription Factor Family AT3G18290 38.550 1.13e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3820 K10144 - gmx:100812023 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2809 5 55390631 55393172 Lja1g3820 1 48227096 48233607 PCT