Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3817 ATGTCATTGCCATCTCTAGTTAGAAGACGTTCAACTGCGGAAATAAGGAACTTGGTCGCAGTTTCCAGCAGCCTCTTACCAGCATTTGGCACCGTTTTGAATGAAGGTAACACGAATCTAAGAAAACATGTCATCGCTCCCTATGACCGAAGATATAGGTTGTGGCAAATGTTCCTAGTGGTATTGGTGGTTTATTCAGCCTGGGCTTCTGCATTTGAGCTAGCTTTCAGAACACTGTCAGTTGGGTCATTGTTGGTGGTTGATCTAGTTGTGGATGTGTTCTTTGCAATTGATATAGTTCTAACTTTCTTCGTGGCTTACTTGGATACTTCAACTTATTTCCTTGTTGATGACCATAAGAAGATTGCTATTAGGTACGTCAAGAAGTTACACTTTGCCATGGACCTGGCTTCTACTGTGCCAATTCAGCAGATATACCAACTTCTGGCAGGTAAATCACACGGAAATGAGTTCTTTGGTTTCCTGAATTTGCTTAGACTCTGGCGATTAAGGCGTGTTAGCGAACTCTTCACGAGGCTAGAGAAAGACATACGAGTTAGCTACTCGGTAACAAGATTTTTTAAGCTTGTATGCGTTACGCTATGTGCAGTGCACTTCGCAGGCTGCACGTATTTCTGGTTGGCGGTACATCATAAAAATCCTGAAAACACATGGATCGGGAAGCAAATGGAGGATTTTAAACATAGAAGTGTCTGGTTGGGTTACACTTATTCCATGTACTGGTCAATGGTCACTCTTAGCACTGTTGGCTATGGAGATTTACATGCAGAAAATTCAAAGGAGAAGCTTTTCAATATATTATATATGCTGTTTAACATTGGCCTCACAGCATATATAATCGGAAACATGACAAATCTGGTGGTTCATAACTCTGTCCGAACCATTGCCATGAGAGATGCCTACAACAAAATATTACAATATGCAAGCAAAAACAGACTCCCAGAAGGTTTGAAGGAGCAAATGTTGGCACACACACAATTGAAGTTCAAGACAGCAGAGTTACAGCAAGAACAAGTGCTACAAGACCTGCCTAAAGCAATTAGAGCCGGCATTGCTCAGCATCTTTTCCGCAATGTAGTTGAAAATGCATATTTATTTAAAGGAGTTTCTAATGATTTTATCACACTGCTGGTAACAGAAATGAAAGTAGAATACTACCCATCTAAGGTTGACATAATCTTGCAAAATGAGATGCCAGCATATTTCTACATTTTGGTGTCTGGATCAGTGGATGTGTTGATATACAAGAATGGGTCTGAAAAGTTCTTGCACAAACTAGAACCAGGAAGCACGGCAGGAGAAATCGGCGTGATGTTTAATAGTCCACAACCTTATACAGTGAGAAGTAGAAGGCTCTCCCAGGTTATACGAATCAATCATCACCATTTCAAGCAGATGGTGCAGCCATTCAGTGACGATGGGAAGGCAATCATCAACAACTTCATTCAGTTTATGAAAGGTCTAAAAAGAGACGTGCTAGAAGAAATACCATGCGTAACAGAATTGCTGGGTGACCTGAATGATGAGCATCTAACACAAACGCAGGGCACACACAATGAAGTTAGAAGTCATGAAGATGATCCATATGAAGAAGGGAGAACAGAAAGTTCCAATCCACAGTCAAGCCCAGTCCCCATCAGAGTCAAAATCTACGGACATCGTCCCAATGAAAACGAAATGGGAAACGGAACAACACCGAAGCTCATACTTCTCCCAAATTCACTCGAGGATCTTTTCAGAGTCGCAGAGAAAAAGTTTGGAAAACGCGGAAGCAAAATTGTTATGGCTGATGGCTCAGAAGTAGAAGAACTAAGCGCCTTAAGAGAGAACGATGAATTATATATCATCTAA 1872 0.4119 MSLPSLVRRRSTAEIRNLVAVSSSLLPAFGTVLNEGNTNLRKHVIAPYDRRYRLWQMFLVVLVVYSAWASAFELAFRTLSVGSLLVVDLVVDVFFAIDIVLTFFVAYLDTSTYFLVDDHKKIAIRYVKKLHFAMDLASTVPIQQIYQLLAGKSHGNEFFGFLNLLRLWRLRRVSELFTRLEKDIRVSYSVTRFFKLVCVTLCAVHFAGCTYFWLAVHHKNPENTWIGKQMEDFKHRSVWLGYTYSMYWSMVTLSTVGYGDLHAENSKEKLFNILYMLFNIGLTAYIIGNMTNLVVHNSVRTIAMRDAYNKILQYASKNRLPEGLKEQMLAHTQLKFKTAELQQEQVLQDLPKAIRAGIAQHLFRNVVENAYLFKGVSNDFITLLVTEMKVEYYPSKVDIILQNEMPAYFYILVSGSVDVLIYKNGSEKFLHKLEPGSTAGEIGVMFNSPQPYTVRSRRLSQVIRINHHHFKQMVQPFSDDGKAIINNFIQFMKGLKRDVLEEIPCVTELLGDLNDEHLTQTQGTHNEVRSHEDDPYEEGRTESSNPQSSPVPIRVKIYGHRPNENEMGNGTTPKLILLPNSLEDLFRVAEKKFGKRGSKIVMADGSEVEELSALRENDELYII* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3817 623 ProSiteProfiles KHA domain profile. 554 623 IPR021789 -
Lja1g3817 623 Gene3D Jelly Rolls 337 496 IPR014710 -
Lja1g3817 623 SUPERFAMILY Voltage-gated potassium channels 47 294 - -
Lja1g3817 623 SMART cnmp_10 372 489 IPR000595 -
Lja1g3817 623 MobiDBLite consensus disorder prediction 526 540 - -
Lja1g3817 623 Pfam KHA, dimerisation domain of potassium ion channel 554 622 IPR021789 -
Lja1g3817 623 Gene3D - 52 296 - -
Lja1g3817 623 PANTHER POTASSIUM CHANNEL KAT3 22 622 - -
Lja1g3817 623 Pfam Ion transport protein 53 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lja1g3817 623 MobiDBLite consensus disorder prediction 518 552 - -
Lja1g3817 623 Pfam Cyclic nucleotide-binding domain 393 475 IPR000595 -
Lja1g3817 623 ProSiteProfiles cAMP/cGMP binding motif profile. 372 491 IPR000595 -
Lja1g3817 623 PANTHER POTASSIUM CHANNEL AKT1 22 622 IPR045319 GO:0005249|GO:0006813
Lja1g3817 623 PRINTS EAG/ELK/ERG potassium channel family signature 99 108 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3817 623 PRINTS EAG/ELK/ERG potassium channel family signature 268 279 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3817 623 PRINTS EAG/ELK/ERG potassium channel family signature 242 259 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3817 623 PRINTS EAG/ELK/ERG potassium channel family signature 88 98 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3817 623 PRINTS EAG/ELK/ERG potassium channel family signature 286 295 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lja1g3817 623 CDD CAP_ED 372 485 IPR000595 -
Lja1g3817 623 SUPERFAMILY cAMP-binding domain-like 301 490 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3817 Lja-Chr1 48192494 48197938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3817 8 622 Ion Channels AT4G32650 58.548 0.0 719
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3817 K21867 - gmx:100794620 907.516