Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3804 ATGACTTGCCATCACAAATCTCCCATGATGCCATTGCTAATGCTGATGATGCTGCTCCTGCTCATAAATCTTGGCAGTGGAAGTCAGACTCAGCAGAATGTCCCTTCCAACTCCAATCTCTGCCCCTTCCATGTATCATGTAGTCATAACAAGAAGTTCCTTGAGCTTCCCGCAGTTCCAGTCCCACTAAAACTCCTCATCAGTAAAATTGATTACAAATCTCAACACATAGTAGCACATGACCCTGATAACTGTCTTCCACGAATCTTACTCACGCTCAACTTTCAATCAATCTTTCCCTTTCGATTATTTGACAATGAATATTTTACTGCAAACCCAACCAACATTACTTTCTTCGATTGTTCCTCAACAGGGCAACGATATCTGAGAATCTCGAGGCAAGACATGTTTTCTTGCCCGATTTATGCCATTGCATCTGATGAAAGCTTCGTTAGTTTCGACCTTGCATCCTGCATCAAACAGCTTGACCGTGTTTTGCCACTAAGCGCTTACCAGATAAGAGGAAATATACTCGACATGGCATGGTCGGAAAATTTATTTGATACAAGATGCTTAAAATGTAAGCACAAATCAAACAAGAAGACTGTATGTGCTGTTTTGCTCTCTGCAGGTGGAGTTGCTGGTTCAGCTGTGCTGGTGTTTTTGCTAGGTGCCATCATTCGTATATATCGCTATTATAAGATGAAAGGCGAGGATCATGCAAGAGTTGAGATTTTTTTGAAGGATTACAAGGCTTTGAAGCCAACTAGATTCTCTTATGCTGATATCAAGAGAATCACACACCAATTTAAGGAAAAGCTAGGTGAAGGAGCTCACGGGGCTGTCTACAAAGGTAAATTGTCCACTCAAATTCTGGTTGCGGTGAAGATCCTCAACAATTCAGAGGGAGATGATGGGACTGAGTTCATCAATGAAGTGGGAACCATGGGCAAAATCCACCATGTCAATGTAGTTCGCTTGCTTGGCTTCTGCGCTGATGGGTTTCATAGAGCTCTAGTTTATGACTTTTTCCCAAACGGGTCACTGCAGAATTTCATCATCTCTGCATCCAACAACAAGGATAAGAAAACCTTCCTTGGATGGGAAAAGTTGCAAGAGATTGCTCTTGGCATAGCCACAGGAATTGATTATCTTCACCAAGGATGTGATCAGAGAATCCTTCACTTTGACATCAATCCTCATAACGTCTTGCTCGATGACACTCTCACTCCAAAGATTACTGACTTTGGTTTGGCAAAGCTGTGTTCCAAGAATCGAAGTACAGTGTCCATGACCGCAGCCAGAGGAACACTAGGCTACATGGCACCTGAAGTTTTTTCTAGAAACTTCGGCAATGTGTCTTACAAGTCTGATATCTACAGTTATGGGATGTTGTTGTTAGAGATGGTTGGAGGAAGAAAGAATATTGTAAACAACACTACTGGTCAAGAAAATGATAGTGTTCAAGTTCTATATCCAGATTGGATACATGGTTTGCTTGAAGGAAAGGACATGCATGTCCCTATTGATGATGAAGAGGGCGATTGTGGAATAGCAAAGAAACTGGCAATTGTGGGACTTTGGTGCATCCAGTGGCATCCTATGCACCGTCCATCCATGAAGACTGTGATGCAGATGTTGCACGGAGAGGGAGACAAGTTAAAAGTTCCCACCAACCCTTTTCAGCCAAAAGCTTCAACTAGTACAAGCACTAGTAGTACTATTGTTGCTGCAAAACGTCTAAATTTGGAGCTGGAAGTGATTCAAGAATTAGATTAG 1779 0.4216 MTCHHKSPMMPLLMLMMLLLLINLGSGSQTQQNVPSNSNLCPFHVSCSHNKKFLELPAVPVPLKLLISKIDYKSQHIVAHDPDNCLPRILLTLNFQSIFPFRLFDNEYFTANPTNITFFDCSSTGQRYLRISRQDMFSCPIYAIASDESFVSFDLASCIKQLDRVLPLSAYQIRGNILDMAWSENLFDTRCLKCKHKSNKKTVCAVLLSAGGVAGSAVLVFLLGAIIRIYRYYKMKGEDHARVEIFLKDYKALKPTRFSYADIKRITHQFKEKLGEGAHGAVYKGKLSTQILVAVKILNNSEGDDGTEFINEVGTMGKIHHVNVVRLLGFCADGFHRALVYDFFPNGSLQNFIISASNNKDKKTFLGWEKLQEIALGIATGIDYLHQGCDQRILHFDINPHNVLLDDTLTPKITDFGLAKLCSKNRSTVSMTAARGTLGYMAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNIVNNTTGQENDSVQVLYPDWIHGLLEGKDMHVPIDDEEGDCGIAKKLAIVGLWCIQWHPMHRPSMKTVMQMLHGEGDKLKVPTNPFQPKASTSTSTSSTIVAAKRLNLELEVIQELD* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3804 592 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Lja1g3804 592 Gene3D Phosphorylase Kinase; domain 1 244 343 - -
Lja1g3804 592 ProSiteProfiles Protein kinase domain profile. 268 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3804 592 PANTHER RUST RESISTANCE KINASE LR10-RELATED 30 591 IPR045874 GO:0004672
Lja1g3804 592 Pfam Protein kinase domain 270 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3804 592 Gene3D Transferase(Phosphotransferase) domain 1 344 560 - -
Lja1g3804 592 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 30 591 - -
Lja1g3804 592 SUPERFAMILY Protein kinase-like (PK-like) 252 547 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3804 Lja-Chr1 47866226 47868425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3804 199 574 Receptor kinase-like Gene Family AT1G66910 43.734 4.31e-100 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g3804 Pkinase 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3804 - - lja:Lj0g3v0145559.1 681.019