Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3803 ATGACGTCGTGCTCTGTGCTATGCTTCCTTCTCCTCCTCTTCCAAATTCTTGTAATTATACAAACAACCTGTGCCTCAAAAACATGTCCCCCTTCTTCGTGTGGCAATATCACCAACATACGTGACCCATTTCGTCTAAAGGATGACCCTCCAACCTGCGGGAATCCGGAGTACGAGTTAACTTGTGTAGAAAACCGCACGTTATTGTTATCTTTATTTCCAGGTAAAAATTATTATGTGAAGGCAATCAACTACAATAATTTCACAGTCCGTGTAGTAGATCCGGGCATCCATGACCATGAGGGCGATTGCTCCTCCATTCCTCGTTATTTCTTATCTGAGCCCAATTTCACCACTACTAGTCGTTATTATTATAGAGATGCCTATTATTATTCTCACATTTTCAAGTACGTGAATTACTTGAAGTGTAGCAACCCAGTGAAGGATGATCTTCGATACGTGGATACAGCTCCCTGCAACCTTCTCAACAACTCCAAAGGTCATCTTTATGCTGTCTATGGGGACCTGTCGGCTTGGGACTTAAAACTCGATTGCCACGTTAAGCTGGTTGCTGCTACATCTCTTATAATTGATTCCACTTACATGCCAAATCAAAACTTTTTCTACCAGGAAATTCACAGGATGTTAGTCTATGGATTTGAAGTGTCGTGGCTGAAGTGGAACGGTCGCCAAATTAATCTGCTAACACTGTTCAGTTCTGTGTTATTACGTATTATAGTGGGCTTTATTCAAGGACTAGCACAGGCAGCAGTACCTCTACTGAAAGCAATGGGTGTTGCACGAGGATATGATGCAATTGGGCTTAATAATAGCCTTGATGTTGAATTCATACTTCTGTCGTATGAGATAGCAAGAGTTACGGGGAAGTATGTCTTGCCATCATATATTCTAGTGAGACTTATGGTTGGTCTTATACTTCTTTTTGGAAATTGGACATATACATATCGAACAAGACATACATCAATTTATGAAAATATAGAAGATTTTCTTCAAGGGAACTCCTTCATACCAATAAGATATTCATATAAAGAGATTAAAAATATGACTAGATGTTTTAAGGATAAGTTGGGTGAAGGAGGCTATGGCACTGTTTACAAAGGAAAGCTTCGTAGTGGACCTTTTGTAGCCGTAAAGATGTTGGGCAAACCTAAGGCTAATGGGCAAGATTTCATTAATGAAGTCGCAACCATAGGAAGAATACATCATGGCAACGTAGTTCAACTTATTGGTTTTTGTGCTGAAGCATCCAAACGTGCTCTTATTTATGAATTCATGCCAAGTGGCTCTCTTGATAGATATATTTCCTCCAAAGAAGATGGTATCTCTTTAACTTATAGCCAAATGTACACAATATCTCTTGGAGTTGCTCGAGGTATAGCATATTTGCATCAAGGTTGTGACATGCAAATTTTACATTTTGATATCAAGCCTCACAACATCCTTCTTGATGAGAACTTTATTCCTAAAGTTTCAGACTTTGGTCTCGCAAAACTGTACCCAATTGACAATAGTATTGTCAAATTGACTGCAGCAAGAGGAACGATTGGCTATATGGCTCCAGAACTATTCTATCAAAATGTTGGAGGAGTGTCCTATAAGGCTGATGTCTATAGCTTTGGAATGCTTTTGATGGAAATGGCAAATAGGAGAAGAAATTTGAATCCATATGCAGATAACTCAAGTCAAATTTTTCTCCCTATTTGGATTTACGACCAATTGATTGAAGAAAGGGAGATAGAAATTGGAGAAGTTACTTACAAGGAAAAGAATGATGTGAAAAAAATGTTCATAGTGGCTTTGTGGTGTATACAATTGAGACCCGATGATCGTCCTTCAATGAACAAAGTAATAGAGATGCTTGAAGGAGAAGTTGAAAGCATTATCATGCCTCCAAAGCCTTCTCTATACCCAACTGAAATTATTCAAGATCCTAGCAACAACTATGATGAATTCATATCGGGTTATACTTCTGGCACAATGTGTTTTCTTGAGGAAACTATAGAAGGTCCTTTATTGAAGGACTCTTCTTAA 2052 0.385 MTSCSVLCFLLLLFQILVIIQTTCASKTCPPSSCGNITNIRDPFRLKDDPPTCGNPEYELTCVENRTLLLSLFPGKNYYVKAINYNNFTVRVVDPGIHDHEGDCSSIPRYFLSEPNFTTTSRYYYRDAYYYSHIFKYVNYLKCSNPVKDDLRYVDTAPCNLLNNSKGHLYAVYGDLSAWDLKLDCHVKLVAATSLIIDSTYMPNQNFFYQEIHRMLVYGFEVSWLKWNGRQINLLTLFSSVLLRIIVGFIQGLAQAAVPLLKAMGVARGYDAIGLNNSLDVEFILLSYEIARVTGKYVLPSYILVRLMVGLILLFGNWTYTYRTRHTSIYENIEDFLQGNSFIPIRYSYKEIKNMTRCFKDKLGEGGYGTVYKGKLRSGPFVAVKMLGKPKANGQDFINEVATIGRIHHGNVVQLIGFCAEASKRALIYEFMPSGSLDRYISSKEDGISLTYSQMYTISLGVARGIAYLHQGCDMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVKLTAARGTIGYMAPELFYQNVGGVSYKADVYSFGMLLMEMANRRRNLNPYADNSSQIFLPIWIYDQLIEEREIEIGEVTYKEKNDVKKMFIVALWCIQLRPDDRPSMNKVIEMLEGEVESIIMPPKPSLYPTEIIQDPSNNYDEFISGYTSGTMCFLEETIEGPLLKDSS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3803 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Lja1g3803 683 SUPERFAMILY Protein kinase-like (PK-like) 342 628 IPR011009 -
Lja1g3803 683 PANTHER RUST RESISTANCE KINASE LR10-RELATED 10 226 IPR045874 GO:0004672
Lja1g3803 683 PANTHER RUST RESISTANCE KINASE LR10-RELATED 278 655 IPR045874 GO:0004672
Lja1g3803 683 Gene3D Transferase(Phosphotransferase) domain 1 432 635 - -
Lja1g3803 683 Gene3D Phosphorylase Kinase; domain 1 338 431 - -
Lja1g3803 683 Pfam Wall-associated receptor kinase galacturonan-binding 29 94 IPR025287 GO:0030247
Lja1g3803 683 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 10 226 - -
Lja1g3803 683 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 278 655 - -
Lja1g3803 683 SMART serkin_6 357 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3803 683 Pfam Protein kinase domain 360 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3803 683 ProSiteProfiles Protein kinase domain profile. 357 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja1g3803 683 ProSitePatterns Protein kinases ATP-binding region signature. 363 385 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3803 Lja-Chr1 47862540 47865786 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3803 308 663 Receptor kinase-like Gene Family AT1G66910 44.865 2.55e-98 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja1g3803 Pkinase 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3803 - - lja:Lj0g3v0294819.3 1116.29