Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3802 ATGTTATCGTCCTCCACCAACTTCGACGCTAACTCAGCCTTCTCCGGCGGCGGATTCATGACCACCGACTCCTCACACCACTCCGACTCATCCCCAGCACCCCTCAAAAGCCGTGACACTCAGGGTTTGGTTCCAGTCACAGTGAGGCAGATAAGTGAGGCTTCTCACTCTGGTGATGACAAGTCCAATTTCGTAATCAACGGTGTCGGTCTCACCAATGTAACCTTGGTTGGAATGGTGTTTGAGAAAGTTGAGAAAAACACTGAAGTTAACTTTGTTTTAGATGATGGAACAGGAAGAATCAAATGTAGGAGATGGGTGAATGAAACTTATGATACGAAGGAAATGGATCAAATACAGGACGGTATGTATGTTCGCCTTTATGGCCATTTGAAGAGCTTTCAAGGTGTAAGGCAACTCGTTGCCTTCTCTGTGAGGCCTGTGACAAATTTTGATGAGATACCTTTTCACTTCATTGATTGCATACACAACCATCTCTATTCCAAAGTTAAGGTTGAAGGAATCACAGGGAATCCTCCATCATCAGACTTATCATTGATTGCAGCCAGAAATGCACCAAATCAAGCAGCATCATCAAACCCGTTATATGCGCATGGTGTGGATCAACTCAAGGGCTGTGATAAATTGGTTTTTGACTATCTGCAGCAGCACTCGGACACGTCAGATGAAAGTGGAATACATGTTGATGAACTATCTCTACAGCTTAGACTTCCATTGGATAAGATCAGGTCATCGCTAGAGGTTCTCAAACAGGAAGGTTATGTATACTCCACCATCGATGAGGATCATCACAAGAAAACCTGA 825 0.4412 MLSSSTNFDANSAFSGGGFMTTDSSHHSDSSPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNFVINGVGLTNVTLVGMVFEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMYVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDCIHNHLYSKVKVEGITGNPPSSDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELSLQLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHKKT* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3802 274 MobiDBLite consensus disorder prediction 19 42 - -
Lja1g3802 274 CDD RPA2_DBD_D 73 166 - -
Lja1g3802 274 Pfam Replication protein A C terminal 197 269 IPR014892 -
Lja1g3802 274 Gene3D - 39 170 IPR012340 -
Lja1g3802 274 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 5 274 - -
Lja1g3802 274 PIRSF RPA32 3 274 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja1g3802 274 SUPERFAMILY "Winged helix" DNA-binding domain 208 273 IPR036390 -
Lja1g3802 274 Gene3D - 205 274 IPR036388 -
Lja1g3802 274 SUPERFAMILY Nucleic acid-binding proteins 43 167 IPR012340 -
Lja1g3802 274 Pfam OB-fold nucleic acid binding domain 74 146 IPR004365 GO:0003676
Lja1g3802 274 PANTHER REPLICATION PROTEIN A-RELATED 5 274 IPR040260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3802 Lja-Chr1 47853325 47857542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3802 4 272 Core DNA Replication Machinery Family AT2G24490 47.253 8.30e-87 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3802 K10739 - gmx:100802512 393.275