Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3795 ATGGATGAATATTCTGGTAAAAGAGCCATTAGTGGAATGGTAGTCCCTAAAAAGGGGATGGGCCACATGTTTAGAGATAGTGCTAATACTAGAGATCAAAATGGTCAAGTATGCAGCCGCGTTGGTTGCAGCAGCGGAGTCAACTCTCCTAAAGGTACTCGAATTGGTTCTTTTGAAAAGGGAAAATCTTTGAGGCCTTCAATGCGATCTTCCAATGGAAAGGAAGCAATTGGAAGCTCTTCTCGAACTTCTTCTGGGACAAGTAACACAGGAAAACCTGTTAAGAAGGCTCAGAAAACACTATCATCTCAGTTAGAGACAGATTCATCTGAAACCAGTAGCGTACAAGATGAACCAGAAGTTTCAAAGCCTGTCCCTCCACCTGAAAAGGTTCAGAGAGGGCTTCATGGTGAAGTAGAAAACTCAGAGTCTGGTAATGTCACGCGGACCGAAGGAGGGAGCTCTAGTTTAGTATCTAATACAAGATCGCGGAGGAAGCCTGCCCTACGAGGTCAAGAAATTCAAAGCACTGGTCCAGGGACACGTGCTGGCACTAGTAGGTACGGGTTAAGGAACCTCAGATGCAACTCTATTTCTGATGTCATCCCTGCTGGTTGTTCACCATCAGATTCCACCCTTAACAGACGGAAAGATATGATAAAAAAGAGAAATTGTGAAGGGGAAAGTAGTTCCGCTGCCAAAGGGAAGAAGATAAGTGGTTCCTTAGTAGAAGGACGGCATTCTGGTTCCAGAAACGGTATATATATCTCTGATTCAAGAATATCTAGAGATGCTCCTCACAGGGATAGGCCAGACAGCAACTCGCCATCTGTTAGAACACGTAGATCAATCGGTGGTCATGCCAGGGGAAGGCTTGCTAGCCAAAATGCTATTCCAGTGGAACCCAATCAGTCCCTTCTCATGATACCTTCTTTTCCACATTCTGGTCATCTTAATGCTCCTAATGGATCACATCATACTACTCTGGAGACTCTATCAAGTTCAAGCTCTAACAGTAGAACCGGTACTAGCAGTGAGGAGTTATATGGTCTTATGCCTGTGTCTCCTAGAGAATATGGCATCACTCATTCTCTAATAAATCGGGATAGTTTTCGACGACGTTATAACATGGATGGTATTGCAGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCTTTTATTGGAGTCCAACTTGTTCCTTTCTGGACTAAACTTCTATGATCAGCACAGAGACATGCGATTGGACATTGATAACATGTCATATGAGGAACTGCTGGCTCTGGAAGAAAGAATGGGCACTGTGAGCACAGCTGTAACAGAGGAAGCTCTATCAGAATGCCTTAAGAAAAATCCGTATCAACCCTCAGCCTCAGACAATGTGACTTGCAATGAGAATAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGCTGCAGATGAAGTGGGGAGTCTGAAATGTGAGCACAAGTATCATGTGGTTTGCATACAGCAGTGGCTACGGCTGAAGAACTGGTGCCCTATTTGCAAAGCACCAGTGGCGTCCTCTAGTCCTTCATCATCTTCCCAGTAA 1608 0.4434 MDEYSGKRAISGMVVPKKGMGHMFRDSANTRDQNGQVCSRVGCSSGVNSPKGTRIGSFEKGKSLRPSMRSSNGKEAIGSSSRTSSGTSNTGKPVKKAQKTLSSQLETDSSETSSVQDEPEVSKPVPPPEKVQRGLHGEVENSESGNVTRTEGGSSSLVSNTRSRRKPALRGQEIQSTGPGTRAGTSRYGLRNLRCNSISDVIPAGCSPSDSTLNRRKDMIKKRNCEGESSSAAKGKKISGSLVEGRHSGSRNGIYISDSRISRDAPHRDRPDSNSPSVRTRRSIGGHARGRLASQNAIPVEPNQSLLMIPSFPHSGHLNAPNGSHHTTLETLSSSSSNSRTGTSSEELYGLMPVSPREYGITHSLINRDSFRRRYNMDGIAEVLLALERIEQDVELTHEQILLLESNLFLSGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEALSECLKKNPYQPSASDNVTCNENKDDIKCSICQEEYVAADEVGSLKCEHKYHVVCIQQWLRLKNWCPICKAPVASSSPSSSSQ* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3795 535 SUPERFAMILY RING/U-box 475 527 - -
Lja1g3795 535 Coils Coil 387 407 - -
Lja1g3795 535 ProSiteProfiles Zinc finger RING-type profile. 481 522 IPR001841 -
Lja1g3795 535 MobiDBLite consensus disorder prediction 27 52 - -
Lja1g3795 535 MobiDBLite consensus disorder prediction 318 346 - -
Lja1g3795 535 SMART ring_2 481 521 IPR001841 -
Lja1g3795 535 MobiDBLite consensus disorder prediction 139 165 - -
Lja1g3795 535 MobiDBLite consensus disorder prediction 261 276 - -
Lja1g3795 535 Pfam Ring finger domain 480 522 IPR001841 -
Lja1g3795 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 526 - -
Lja1g3795 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 534 IPR013083 -
Lja1g3795 535 MobiDBLite consensus disorder prediction 19 188 - -
Lja1g3795 535 MobiDBLite consensus disorder prediction 64 119 - -
Lja1g3795 535 MobiDBLite consensus disorder prediction 222 298 - -
Lja1g3795 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 526 IPR045191 GO:0061630
Lja1g3795 535 SMART FANCL_C_2 477 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3795 Lja-Chr1 47788194 47792937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3795 380 522 C3H Transcription Factor Family AT2G15530 44.755 8.08e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3795 - - gmx:100819874 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2779 5 55025785 55030444 Lja1g3795 1 47788194 47792937 PCT