LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g3782	ATGACGGTGGAGCTCATGGGGTTCCCTCAAATGGACCAACAGAAGAAAGCAATTCAAGAGGCTGCAAACGAAGGCTTAAAAGGCATGGAGCATCTCATCAATCTCCTCTCTCACCAACCCTCTCATCTCCAAACAGATCTAACCGACGTAACCGTTTCCAACTTCAAAAAACTCATCTCCCTCCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCACCTCTCCCCTCCACCCCCACTCCGCCACAACCTAATCCCATCGCCGTTCACCACCCTAAGCCCACCGTCGCACAATCCCTGACTCTCGACTTCACAAAACCCAACAACTTTTTGACCTCCAACGCTAAGTCGTTAGAGCTCGAATTCTCCAAGGAAACAACAACGTTTAGCGTCTCCTCCAACTCCTCCTTCCTCTCCTCTGCCATCACCGGCGATGGCAGCGTCTCCAACGGCAAACTAGGCTCCTCCATCTTCCTCACCCCGGCGGTCTCCGCCGGCGGGAAGCCTCCCCTCTCATCAACAACTCCGTCCAAGAAAAGGTGCCACGAGCACTCCGGCGATCCCTCCGGCTCCAACACCAAGTGCCACTGCACCAAGAGAAGGAAGAATCGGGTGAAGAAGACGATAAGGGTGCCGGCGGTGAGTTCGAAGGTGGCGGATATTCCGGCGGACGAGTACTCATGGAGGAAGTACGGTCAGAAACCGATCAAGGGCACACCATACCCACGTGGTTATTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAACACGTGGAGCGGGCAACGGATGATCCGGCGATGCTGATTGTGACGTACGAGGATGAGCACGATCATGGGATTCAGACCGCGATGCATGATAACATTTCTGGTGCTGTGGGTTTCGTATACGAGTCAACGTAA	906	0.5541	MTVELMGFPQMDQQKKAIQEAANEGLKGMEHLINLLSHQPSHLQTDLTDVTVSNFKKLISLLNRTGHARFRRAPLPSTPTPPQPNPIAVHHPKPTVAQSLTLDFTKPNNFLTSNAKSLELEFSKETTTFSVSSNSSFLSSAITGDGSVSNGKLGSSIFLTPAVSAGGKPPLSSTTPSKKRCHEHSGDPSGSNTKCHCTKRRKNRVKKTIRVPAVSSKVADIPADEYSWRKYGQKPIKGTPYPRGYYKCSTVRGCPARKHVERATDDPAMLIVTYEDEHDHGIQTAMHDNISGAVGFVYEST*	302

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g3782	301	PANTHER	WRKY PROTEIN	14	295	-	-
	Lja1g3782	301	Pfam	WRKY DNA -binding domain	224	280	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja1g3782	301	MobiDBLite	consensus disorder prediction	164	202	-	-
	Lja1g3782	301	SMART	WRKY_cls	222	282	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja1g3782	301	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	14	295	IPR044810	GO:0003700
	Lja1g3782	301	ProSiteProfiles	WRKY domain profile.	217	283	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Lja1g3782	301	Pfam	Plant zinc cluster domain	178	220	IPR018872	-
	Lja1g3782	301	Gene3D	WRKY domain	208	282	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Lja1g3782	301	SUPERFAMILY	WRKY DNA-binding domain	220	282	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g3782	Lja-Chr1	47527489	47529219	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja1g3782	1	300	WRKY Transcription Factor Family	AT2G24570	55.589	4.90e-106	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Lja1g3782		WRKY	5.8e-25	CL0274