Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3780 ATGGGAAGAGAAGATTTACACAAATTAAGGAAATCAATTAATTGTTTCATTAAATTACATATTTATATTTCTATTAGGAGGATTCGTGTTAGAGGTGGCAACGTGAAGTGGAGGGCACTGAGATTGGATACTGGAAACTTTTCATGGGGTAGTGAAACAGTAACTCGCAAGACGCGTCTATTAGATGTGGTTTACAATGCCTCAAACAATGAGCTTGTGCGAACCCAAACCCTGGTCAAAAGTGCTATTGTTCAGGTTGATGCTGCTCCGTTCAAACAGTGGTACCTTCAGCACTATGGGGTTGATATTGGCAGAAAGAAGAAAACAACATCCAAGAAGGACTCTACAGAGGAGGGTGAAGCTGCTGCTGAAGACGCAAAGAAAAGTAACCATGTGCAGAGGAAACTTGAGAATCGCCAGAAAGATCGTACTCTTGATGCCCACATCGAAGAGCAATTTAGTGGTGGCCGATTGCTGGCATGTATTTCTTCTCGCCCGGGTCAATGTGGCAGGGCTGATGGGTACATACTAGAAGGTAAGGAACTGGAATTTTACATGAAGAAACTTCAGAAGAAGAAGGGAAAGGGTGCTGCAGCCTAA 600 0.4317 MGREDLHKLRKSINCFIKLHIYISIRRIRVRGGNVKWRALRLDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTTSKKDSTEEGEAAAEDAKKSNHVQRKLENRQKDRTLDAHIEEQFSGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAAA* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3780 199 Pfam Ribosomal protein S8e 24 177 IPR022309 -
Lja1g3780 199 PANTHER 40S RIBOSOMAL PROTEIN S8 17 198 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja1g3780 199 TIGRFAM eS8: ribosomal protein eS8 24 179 IPR001047 GO:0003735|GO:0005840|GO:0006412
Lja1g3780 199 MobiDBLite consensus disorder prediction 107 143 - -
Lja1g3780 199 CDD Ribosomal_S8e_like 25 177 - -
Lja1g3780 199 PANTHER 40S RIBOSOMAL PROTEIN S8 17 198 - -
Lja1g3780 199 Gene3D - 142 195 - -
Lja1g3780 199 Gene3D - 17 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3780 Lja-Chr1 47484491 47487126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3780 18 186 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 80.588 9.09e-96 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3780 K02995 - gmx:100500112 296.204